June 2007 Archives by thread

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Starting: Fri Jun 1 08:23:44 PDT 2007
Ending: Fri Jun 29 18:21:55 PDT 2007
Messages: 321

• [Genome] The count of all annotated exons for a UCSC known gene ......   Rileen Sinha
  • [Genome] The count of all annotated exons for a UCSC known gene ......   Ann Zweig
    • [Genome] The count of all annotated exons for a UCSC known gene ......   Rileen
      • [Genome] The count of all annotated exons for a UCSC known gene ......   Ann Zweig
      • [Genome] The count of all annotated exons for a UCSC known gene ......   Rileen
• [Genome] motif quality assessment   Ann Zweig
  • [Genome] Restriction enzyme tracks   Russell, Archie
    • [Genome] Restriction enzyme tracks   Ann Zweig
  • [Genome] improbizer question   jp d
    • [Genome] improbizer question   Galt Barber
• [Genome] related to conservation track   Rachel Harte
• [Genome] lost track entries / multiple configurations   Rachel Harte
• [Genome] BLAT question   Sam, Judy
  • [Genome] BLAT question   Archana Thakkapallayil
• [Genome] remove custom track via URL parameter   Rachel Harte
• [Genome] 2 questions about BLAT   Rachel Harte
• [Genome] cds info on mRNA track (human)   Micha Sammeth
  • [Genome] cds info on mRNA track (human)   Rachel Harte
    • [Genome] est tables in the mysql database   Micha Sammeth
• [Genome] Expression of brain-specific genes   Rachel Harte
• [Genome] Entrez gene ID to refseq ID mapping   Rachel Harte
• [Genome] construct human promoters   Yuval Tabach
  • [Genome] construct human promoters   Archana Thakkapallayil
• [Genome] question about URL construction   jing_gao at agilent.com
  • [Genome] question about URL construction   Ann Zweig
    • [Genome] question about URL construction   jing_gao at agilent.com
• [Genome] Coding Sequence [hg17]   Anton Kratz
  • [Genome] Coding Sequence [hg17]   Fan Hsu
• [Genome] additional genomes   Erez Levanon
• [Genome] Sequence retrieval   Sung, Myong-Hee (NIH/NCI) [E]
  • [Genome] Sequence retrieval   Archana Thakkapallayil
• [Genome] question/mistake?   Kozak, Christine (NIH/NIAID) [E]
• [Genome] question/mistake?   Robert Kuhn
• [Genome] repeats in bosTau2.0 vs bosTau3.0   Heather Trumbower
  • [Genome] repeats in bosTau2.0 vs bosTau3.0   João Fadista
• [Genome] search transcripts with alternative splicing or polyadenylation   Hang Wang
  • [Genome] search transcripts with alternative splicing or polyadenylation   Archana Thakkapallayil
• [Genome] additional genomes   Robert Kuhn
• [Genome] Liftover question   Shan Yang
  • [Genome] Liftover question   Kayla Smith
• [Genome] custom track submission   Kendy Wong
  • [Genome] custom track submission   Heather Trumbower
• [Genome] Hello UCSC Genome Staff   Glenn Soltes
  • [Genome] Hello UCSC Genome Staff   Kayla Smith
• [Genome] Mapping SNP and protein   Helix Photon
  • [Genome] Mapping SNP and protein   Kayla Smith
• [Genome] Linking to specific genome position on custom tracks saved in session   Andy Chu
  • [Genome] Linking to specific genome position on custom tracks saved in session   Kayla Smith
• [Genome] GeneID along with variations   Ritesh Kumar
  • [Genome] GeneID along with variations   Kayla Smith
• [Genome] Uploading custom browser tracks   Garrett M Frampton
  • [Genome] Uploading custom browser tracks   Hiram Clawson
• [Genome] binary program phyloGif   Yufeng Zhai
  • [Genome] binary program phyloGif   Galt Barber
• [Genome] questions about PI distribution   s58881139 at yahoo.com.tw
  • [Genome] questions about PI distribution   Fan Hsu
• [Genome] how is knowntoEnsembl generated?   Jean Chang
  • [Genome] : how is knowntoEnsembl generated?   Jean Chang
  • [Genome] how is knowntoEnsembl generated?   Hiram Clawson
• [Genome] use for UTRS   ssakr at igh.cnrs.fr
  • [Genome] use for UTRS   Brooke Rhead
• [Genome] regarding file SNP126orthoPanTro2RheMac2.txt   saurabh
  • [Genome] regarding file SNP126orthoPanTro2RheMac2.txt   Brooke Rhead
• [Genome] Rabbit Genome   Jeff Ye
  • [Genome] Rabbit Genome   Brooke Rhead
• [Genome] Gene symbols with spaces in kgxref table   Greg Singer
• [Genome] Problems Accessing Horse Sequnce Data   Glenn Soltes
  • [Genome] Problems Accessing Horse Sequnce Data   Brooke Rhead
• [Genome] Adding Illumina gene array probes ..   Benjamin Berman
  • [Genome] Adding Illumina gene array probes ..   Heather Trumbower
    • [Genome] Adding Illumina gene array probes ..   Ben Berman
• [Genome] Zebrafish sequence question   Jordan Shavit
  • [Genome] Zebrafish sequence question   Brooke Rhead
• [Genome] Custom Annotations locally   Vinayak Kulkarni
  • [Genome] Custom Annotations locally   Brooke Rhead
• [Genome] Question regarding saving custom tracks and how to get "permanent" url link?   Nikic, Svetlana
  • [Genome] Question regarding saving custom tracks and how to get "permanent" url link?   Brooke Rhead
• [Genome] Question about Gene description on genome browser   Fiona Young
  • [Genome] Question about Gene description on genome browser   Kayla Smith
    • [Genome] Question about Gene description on genome browser   Fiona Young
• [Genome] quetion regarding the table browser   asaf levy
  • [Genome] quetion regarding the table browser   Kayla Smith
• [Genome] emulating the EvoFold track style   Ryan Morin
• [Genome] Gene symbols with spaces in kgxref table   Robert Kuhn
• [Genome] Custom Annotations locally   Brooke Rhead
• [Genome] emulating the EvoFold track style   Robert Kuhn
• [Genome] Fwd: cool   Tim Hefferon
• [Genome] Fwd: cool part 2   Tim Hefferon
  • [Genome] Fwd: cool part 2   Hiram Clawson
• [Genome] Fwd: cool part 2   Robert Kuhn
  • [Genome] cool part 2   Maximilian Haeussler
• [Genome] binary program phyloGif   Galt Barber
• [Genome] how many chr location I may have in custom wig file?   Khrebtukova, Irina
  • [Genome] how many chr location I may have in custom wig file?   Brooke Rhead
    • [Genome] how many chr location I may have in custom wig file?   Khrebtukova, Irina
  • [Genome] how many chr location I may have in custom wig file?   Hiram Clawson
    • [Genome] how many chr location I may have in custom wig file?   Khrebtukova, Irina
    • [Genome] how many chr location I may have in custom wig file?   Khrebtukova, Irina
• [Genome] Query regarding datasets hosted by UCSC   Viswanath, Lalitha (NIH/NCI) [C]
  • [Genome] Query regarding datasets hosted by UCSC   Ann Zweig
• [Genome] Problems with mirror site at MCW: error message "The table 'userDb' is full"   Liang, Ping
  • [Genome] Problems with mirror site at MCW: error message "The table 'userDb' is full"   Ann Zweig
• [Genome] (no subject)   Kapranov, Philipp
  • [Genome] (no subject)   Ann Zweig
    • [Genome] (no subject)   Kapranov, Philipp
    • [Genome] (no subject)   Kapranov, Philipp
      • [Genome] (no subject)   Kapranov, Philipp
• [Genome] Question regarding "MultiZ 17way Frames" table   Guruprasad Ananda
  • [Genome] Question regarding "MultiZ 17way Frames" table   Ann Zweig
• [Genome] (no subject)   Wistow, Graeme (NIH/NEI) [E]
  • [Genome] (no subject)   Murgolo, Nicholas
    • [Genome] (no subject)   Ewan Birney
    • [Genome] (no subject)   Ann Zweig
      • [Genome] (no subject)   Ann Zweig
• [Genome] (no subject)   Wu, Yanhong Ph.D.
• [Genome] Sense/antisense genes   Loose, David S
  • [Genome] Sense/antisense genes   Ann Zweig
• [Genome] revise session variables for GB to MySQL   Ginger Cheng
  • [Genome] revise session variables for GB to MySQL   Ann Zweig
• [Genome] (no subject)   Kayla Smith
• [Genome] (no subject)   Ann Zweig
• [Genome] How to find out Alternative Splicing   Anton Kratz
  • [Genome] How to find out Alternative Splicing   Archana Thakkapallayil
    • [Genome] How to find out Alternative Splicing   Anton Kratz
• [Genome] SNPs   riztyan
  • [Genome] SNPs   Heather Trumbower
• [Genome] Opossum's genome version   Eli Koren
  • [Genome] Opossum's genome version   Archana Thakkapallayil
• [Genome] Bed file   Alon Goren
  • [Genome] Bed file   Ann Zweig
• [Genome] Yeast PhastCons   Scott Doniger
  • [Genome] Yeast PhastCons   Archana Thakkapallayil
• [Genome] hg17 phastcons   Yael Altuvia
  • [Genome] hg17 phastcons   Archana Thakkapallayil
• [Genome] fosmid request for Bruce Birren   Gaia Roversi
• [Genome] multiple entries for a gene in refFlat table   Amit U Sinha
  • [Genome] multiple entries for a gene in refFlat table   Archana Thakkapallayil
• [Genome] ePCR   Ronald E. Worthington, Ph.D.
  • [Genome] ePCR   Ann Zweig
• [Genome] sequence retrieval   David Haynor
  • [Genome] sequence retrieval   Archana Thakkapallayil
• [Genome] est tables in the mysql database   Robert Kuhn
  • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Micha Sammeth
• [Genome] genomic location mapping to track info   Karginov, Fedor
  • [Genome] genomic location mapping to track info   Archana Thakkapallayil
• [Genome] batch mode gene sorter   Sridhar Kudaravalli
  • [Genome] batch mode gene sorter   Archana Thakkapallayil
• [Genome] Question on loading help docs   Ma, Jin
  • [Genome] Question on loading help docs   Hiram Clawson
• [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Robert Kuhn
  • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Micha Sammeth
• [Genome] multiple entries for a gene in refFlat table   Anil Jegga
  • [Genome] multiple entries for a gene in refFlat table   Archana Thakkapallayil
• [Genome] making PDF images in batch mode   Yu Zhou
  • [Genome] making PDF images in batch mode   Kayla Smith
• [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Robert Kuhn
  • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Micha Sammeth
    • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Angie Hinrichs
      • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Micha Sammeth
      • [Genome] "_dupX" names for transcript ID duplicates on same chromosomes   Angie Hinrichs
• [Genome] table field bin in blat databases   Yufeng Zhai
• [Genome] rhesus refseqs   Russell, Archie
  • [Genome] rhesus refseqs   Kayla Smith
• [Genome] How to find out Alternative Splicing   Kayla Smith
• [Genome] (no subject)   Lin, Gong-Biao
• [Genome] known gene   Lin, Gong-Biao
  • [Genome] known gene   Brooke Rhead
• [Genome] canFam2ToHg18 liftOver   Emmanuel Buschiazzo
  • [Genome] canFam2ToHg18 liftOver   Brooke Rhead
    • [Genome] canFam2ToHg18 liftOver   Smith, Brandon
      • [Genome] canFam2ToHg18 liftOver   Brooke Rhead
• [Genome] 2 strong requests   Tim Hefferon
  • [Genome] 2 strong requests   Brooke Rhead
• [Genome] Sense-antisense Transcripts   Loose, David S
  • [Genome] Sense-antisense Transcripts   Brooke Rhead
• [Genome] psltoBed   Ma, Jin
  • [Genome] psltoBed   Brooke Rhead
    • [Genome] psltoBed   Ma, Jin
      • [Genome] psltoBed   Brooke Rhead
      • [Genome] psltoBed   Hiram Clawson
• [Genome] Retrieving Intergenic Sequence   Aubrey E Hill
  • [Genome] Retrieving Intergenic Sequence   Brooke Rhead
• [Genome] Table field 'bin' in blat databases   Yufeng Zhai
  • [Genome] Table field 'bin' in blat databases   Brooke Rhead
• [Genome] Genome coordinate conversion. problem in the chain file?   Tanya Konovalova
  • [Genome] Genome coordinate conversion. problem in the chain file?   Kayla Smith
• [Genome] (no subject)   JIA Hui
• [Genome] (no subject)   JIA Hui
  • [Genome] (no subject)   Brooke Rhead
• [Genome] Cow genome 3.0   Zhu, James
  • [Genome] Cow genome 3.0   Brooke Rhead
• [Genome] Inquire about Genome Browser   Yanwen Jiang
  • [Genome] Inquire about Genome Browser   Hiram Clawson
• [Genome] How to add sequence retrieval feature in browsers   Yufeng Zhai
  • [Genome] How to add sequence retrieval feature in browsers   Brooke Rhead
• [Genome] nucleosome positions on Scer genome   Peter McHale
  • [Genome] nucleosome positions on Scer genome   Ann Zweig
• [Genome] mouse and chimp conservation with human   Thomas Lacroix
  • [Genome] mouse and chimp conservation with human   Ann Zweig
• [Genome] hi, why are there so many "0" or "1" in the phastcons track   zhangy
  • [Genome] hi, why are there so many "0" or "1" in the phastcons track   Archana Thakkapallayil
    • [Genome] hi, why are there so many "0" or "1" in the phastconstrack   zhangy
      • [Genome] hi, why are there so many "0" or "1" in the phastconstrack   Ann Zweig
      • [Genome] hi, why are there so many "0" or "1" in the phastconstrack   zhangy
      • [Genome] hi, why are there so many "0" or "1" in the phastconstrack   zhangy
      • [Genome] hi, why are there so many "0" or "1" in the phastconstrack   Kate Rosenbloom
• [Genome] Browser table / data download   bina at purdue.edu
  • [Genome] Browser table / data download   Hiram Clawson
• [Genome] problems with export to ps   Jasinska, Anna
  • [Genome] problems with export to ps   Kayla Smith
• [Genome] maf2fasta   Navin Elango
  • [Genome] maf2fasta   Angie Hinrichs
• [Genome] D. melanogaster data   Leon-Charles Tranchevent
  • [Genome] D. melanogaster data   Kayla Smith
• [Genome] IP address   cattoglio.claudia at hsr.it
  • [Genome] IP address   Kayla Smith
• [Genome] question about hg18 self-alignment   Chiang, Charleston
  • [Genome] question about hg18 self-alignment   Kayla Smith
• [Genome] extracting sequences from promoter regions   bina at purdue.edu
• [Genome] NCBI NT contig batch coords to UCSC genome browser coords   zhu zhidong
  • [Genome] NCBI NT contig batch coords to UCSC genome browser coords   Hiram Clawson
• [Genome] trying to search for a range   Tom Scerri
  • [Genome] trying to search for a range   Brooke Rhead
• [Genome] human gene expression question   DeCerbo,Joshua (stu)
  • [Genome] human gene expression question   Brooke Rhead
• [Genome] guinea pig browser   Hani Boshra
  • [Genome] guinea pig browser   Brooke Rhead
• [Genome] Affymetrix Transcriptome Phase III data availability   Can Cenik
  • [Genome] Affymetrix Transcriptome Phase III data availability   Brooke Rhead
    • [Genome] Affymetrix Transcriptome Phase III data availability   Brooke Rhead
• [Genome] Genome Browser   Andrew Fritz
  • [Genome] Genome Browser   Brooke Rhead
    • [Genome] Genome Browser   Brooke Rhead
• [Genome] liftover   Lukasz Potrzebowski
  • [Genome] liftover   Kayla Smith
• [Genome] UCSC Genome Browser can't locate certain accession numbers present in GenBank   #LEE TUAN MENG#
  • [Genome] UCSC Genome Browser can't locate certain accession numbers present in GenBank   Rachel Harte
• [Genome] fetching sequences   Eran, Alal
  • [Genome] fetching sequences   Rachel Harte
  • [Genome] fetching sequences   Rachel Harte
• [Genome] blat vs gfclient   stef
  • [Genome] blat vs gfclient   Brooke Rhead
• [Genome] Unique canonical sequence for each HGNC gene symbol   Amir Karger
  • [Genome] Unique canonical sequence for each HGNC gene symbol   Kayla Smith
    • [Genome] Unique canonical sequence for each HGNC gene symbol   Amir Karger
      • [Genome] Unique canonical sequence for each HGNC gene symbol   Brooke Rhead
• [Genome] Including our tracks   David Vargas
  • [Genome] Including our tracks   Donna Karolchik
• [Genome] Browser query   Patrick Sullivan
• [Genome] light blue vs. dark blue in UCSC genes   Ben Berman
  • [Genome] light blue vs. dark blue in UCSC genes   Ann Zweig
• [Genome] Browser query   Robert Kuhn
  • [Genome] Browser query   Patrick Sullivan
• [Genome] Browser query   Robert Kuhn
• [Genome] Determining nucleotide composition in genomic sections   Montemayor, Celina
  • [Genome] Determining nucleotide composition in genomic sections   Archana Thakkapallayil
    • [Genome] Determining nucleotide composition in genomic sections   Archana Thakkapallayil
    • [Genome] Determining nucleotide composition in genomic sections   richard
• [Genome] UCSC Bowser   N Cody
  • [Genome] UCSC Bowser   Donna Karolchik
  • [Genome] UCSC Bowser   Russell, Archie
    • [Genome] UCSC Bowser   Brian Raney
  • [Genome] UCSC Bowser   Kayla Smith
• [Genome] Multispecies Core Promoter Alignments   Dr. med. Peter Robinson
  • [Genome] Multispecies Core Promoter Alignments   Archana Thakkapallayil
• [Genome] Confusion   Karen P. Mckinnon
  • [Genome] Confusion   Archana Thakkapallayil
• [Genome] Simple mysql question   Troy Amburg
  • [Genome] Simple mysql question   Archana Thakkapallayil
• [Genome] bosTau3 genome assembly   Namshin Kim
  • [Genome] bosTau3 genome assembly   Kayla Smith
• [Genome] Brower, Amy is out of the office.   ABrower at twt.com
• [Genome] Conserved UTR sequences   T Joshi
  • [Genome] Conserved UTR sequences   Kayla Smith
• [Genome] questions   asaflev1 at post.tau.ac.il
  • [Genome] questions   Kayla Smith
• [Genome] gene symbol   Jay an
  • [Genome] gene symbol   Brooke Rhead
• [Genome] GO annotation   Jay an
  • [Genome] GO annotation   Brooke Rhead
    • [Genome] GO annotation   Jay an
• [Genome] Conserverd Regions   Mayra Eduardoff
  • [Genome] Conserverd Regions   Brooke Rhead
• [Genome] liftOver strand information is confusing   Ivana Vukusic
  • [Genome] liftOver strand information is confusing   Brooke Rhead
• [Genome] question about fields in table browser   LaRon Hughes
  • [Genome] Fwd: question about fields in table browser   LaRon Hughes
    • [Genome] Fwd: question about fields in table browser   Brooke Rhead
• [Genome] how to batch download conservation data?   YAN FU
  • [Genome] how to batch download conservation data?   Brooke Rhead
• [Genome] multiple identifiers using table browser intersection   Russell, Archie
  • [Genome] multiple identifiers using table browser intersection   Brooke Rhead
• [Genome] A question about conservation score   Shan Yang
  • [Genome] A question about conservation score   Brooke Rhead
    • [Genome] A question about conservation score   Brooke Rhead
• [Genome] Hi, some question about download STS sequence   郝向稳
  • [Genome] Hi, some question about download STS sequence   Kayla Smith
• [Genome] Ensembl and UCSC Browsers and their differences...   Emma Grant
  • [Genome] Ensembl and UCSC Browsers and their differences...   Kayla Smith
• [Genome] Display of custom tracks   Nikic, Svetlana
  • [Genome] Display of custom tracks   Hiram Clawson
• [Genome] Bed file Format   Williams, Alan
  • [Genome] Bed file Format   Brooke Rhead
• [Genome] cite In-Silico PCR   Ireland, James
• [Genome] question about liftOver   Xianjun Dong
  • [Genome] question about liftOver   Archana Thakkapallayil
• [Genome] Hello UCSC Genome browser staff   ארז ליבנה
  • [Genome] Hello UCSC Genome browser staff   Archana Thakkapallayil
• [Genome] Reproducing PhastCons Results   Halit Ongen
  • [Genome] Reproducing PhastCons Results   Kate Rosenbloom
• [Genome] panTro2 net alignment with human - chr4:69716327-69717044   Amit Indap
  • [Genome] panTro2 net alignment with human - chr4:69716327-69717044   Archana Thakkapallayil
• [Genome] cite In-Silico PCR   Robert Kuhn
• [Genome] ENCODE SNPs for resequenced regions   sde at mrc-lmb.cam.ac.uk
  • [Genome] ENCODE SNPs for resequenced regions   Heather Trumbower
• [Genome] multiple identifiers using table browser intersection   Russell, Archie
  • [Genome] multiple identifiers using table browser intersection   Brooke Rhead
• [Genome] GO annotation   Brooke Rhead
• [Genome] rsync server not right?   Ginger Cheng
• [Genome] Clicking on a gene in a custom track and linking out to a URL   John N. Weinstein
  • [Genome] Clicking on a gene in a custom track and linking out to a URL   archanat at soe.ucsc.edu

Last message date: Fri Jun 29 18:21:55 PDT 2007
Archived on: Fri Jun 29 18:21:59 PDT 2007

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• More info on this list...