[Genome] blat vs gfclient

stef Stephane.Liva at curie.fr
Thu Jun 21 06:20:10 PDT 2007


Hi,
I use the gfServer/gfClient program in local.
I blat a sequence:
TTCCTAGGGTTATGCATCTGAAATGGCTTCCCTGGGAACATCTGTCTTTTACTGTTGTAG

In my server I have just one hit:
M_19_P435
60
0
60
60
100
chr19
+
24227499
24227559

In your server I have 16 hits:

  ACTIONS      QUERY           SCORE START  END QSIZE IDENTITY CHRO
STRAND  START    END      SPAN
---------------------------------------------------------------------------------------------------
browser details YourSeq           60     1    60    60 100.0%    19   +   24252500  24252559     60
browser details YourSeq           44     1    60    60  86.7%     X   +   47849681  47849740     60
browser details YourSeq           40     1    60    60  83.4%     1   -  230241821 230241880     60
browser details YourSeq           40     1    60    60  83.4%     1   +  199935838 199935897     60
browser details YourSeq           34    17    60    60  88.7%    19   +   24247652  24247695     44
browser details YourSeq           31    17    57    60  87.9%     X   -   12895565  12895605     41
browser details YourSeq           31    17    59    60  86.1%     X   +  145427137 145427179     43
browser details YourSeq           30    21    60    60  87.5%     4   -  162321720 162321759     40
browser details YourSeq           27    17    49    60  91.0%     9   +    5249431   5249463     33
browser details YourSeq           23    25    53    60  88.0%    10   -   78936679  78936706     28
browser details YourSeq           22    10    38    60  69.6%     4   -  152980422 152980444     23
browser details YourSeq           21    20    40    60 100.0%     7   +   91099097  91099117     21
browser details YourSeq           20    20    39    60 100.0%     X   -   84882537  84882556     20
browser details YourSeq           20    20    39    60 100.0%     8   -  114706556 114706575     20
browser details YourSeq           20    20    39    60 100.0%    13   -   78551231  78551250     20
browser details YourSeq           20    17    36    60 100.0%     X   +  109671326 109671345     20


Why do I have a difference between the 2 blat ?
Maybe there is some options ?
Cause I need to have all the hits.
best
Stef Liva




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