[Genome] blat vs gfclient
stef
Stephane.Liva at curie.fr
Thu Jun 21 06:20:10 PDT 2007
Hi,
I use the gfServer/gfClient program in local.
I blat a sequence:
TTCCTAGGGTTATGCATCTGAAATGGCTTCCCTGGGAACATCTGTCTTTTACTGTTGTAG
In my server I have just one hit:
M_19_P435
60
0
60
60
100
chr19
+
24227499
24227559
In your server I have 16 hits:
ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO
STRAND START END SPAN
---------------------------------------------------------------------------------------------------
browser details YourSeq 60 1 60 60 100.0% 19 + 24252500 24252559 60
browser details YourSeq 44 1 60 60 86.7% X + 47849681 47849740 60
browser details YourSeq 40 1 60 60 83.4% 1 - 230241821 230241880 60
browser details YourSeq 40 1 60 60 83.4% 1 + 199935838 199935897 60
browser details YourSeq 34 17 60 60 88.7% 19 + 24247652 24247695 44
browser details YourSeq 31 17 57 60 87.9% X - 12895565 12895605 41
browser details YourSeq 31 17 59 60 86.1% X + 145427137 145427179 43
browser details YourSeq 30 21 60 60 87.5% 4 - 162321720 162321759 40
browser details YourSeq 27 17 49 60 91.0% 9 + 5249431 5249463 33
browser details YourSeq 23 25 53 60 88.0% 10 - 78936679 78936706 28
browser details YourSeq 22 10 38 60 69.6% 4 - 152980422 152980444 23
browser details YourSeq 21 20 40 60 100.0% 7 + 91099097 91099117 21
browser details YourSeq 20 20 39 60 100.0% X - 84882537 84882556 20
browser details YourSeq 20 20 39 60 100.0% 8 - 114706556 114706575 20
browser details YourSeq 20 20 39 60 100.0% 13 - 78551231 78551250 20
browser details YourSeq 20 17 36 60 100.0% X + 109671326 109671345 20
Why do I have a difference between the 2 blat ?
Maybe there is some options ?
Cause I need to have all the hits.
best
Stef Liva
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