[Genome] canFam2ToHg18 liftOver

[Emmanuel Buschiazzo]

Hello team,

I have use the canFam2ToHg18.over.chain.gz file with the stand-alone 
liftOver.

Two unexpected things happened:
-all entries in the output appeared twice (therefore I then used jkUnik)
- from 83013 sequences from the dog genome, only 52371 corresponding 
human sequences were found and only 2867 were unmapped (To my defense, I 
can add that I had -minMatch=0.01 and I chose the multiple option; also 
I have successfully used liftOver with other species).

Because this strange result is specific to this file, there might be 
something wrong with it.

Moreover, the online liftOver could not seem to handle my file, and has 
never game me a result page... although I might have not been patient 
enough?

Thank you for any help with this!

Emmanuel.

<mailto:ebr26 at student.canterbury.ac.nz>