[Genome] "_dupX" names for transcript ID duplicates on same chromosomes
Micha Sammeth
gmicha at gmail.com
Mon Jun 11 15:21:00 PDT 2007
Hello again,
thank you, Robert for the explanation on the ESTs, I got it clear now.
I have another little problem, hopefully the last one for this project:
when I download the (hg17) mRNA track, I get conveniently unique
transcript_id tags - at least on a chromosome level, which is enough
(e.g., "AK130020" and "AK130020_dup1" on chr1). From which field does
the table browser retrieve them? It does not seem to be all_mrna.qName,
nor did I find a field in gbCdnaInfo or other soundy tables that are up
to 1-2 joins away from all_mrna. I would need these "_dupX" identifiers
to map back the CDS info I get from hg17.cds to genomic coordinates.
Best thanks, micha.
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