[Genome] Problems Accessing Horse Sequnce Data

[Brooke Rhead]

Hi Glenn,

The "DNA" link at the top of the page should get you the region you are 
looking for.  Simply go to your region of interest in the horse genome 
browser and click the link.  You should see a page with several options 
for DNA retrieval and formatting, including boxes for adding extra bases 
upstream and downstream of the region you are currently viewing.

More information on this feature is located in our User's Guide, here:

http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TrackFormatDNA

I hope this solves the problem.  If you have further questions, please 
feel free to contact us again by writing to this list.

--
Brooke Rhead
UCSC Genome Bioinformatics Group



Glenn Soltes wrote:
> Hello UCSC
> 
>  
> 
> I have been trying to extract a 20,000bp region of the UnChr horse
> genome to work with.
> 
>  
> 
> Seems like it is an impossible task:
> 
>  
> 
> The sequence browser will give me a target area using a keyword search
> and will give me a short sequence that is clearly what I want.  I want
> to extract about 10,000 bp upstream and 10,000 bp downstream but the
> genome browser refuses to give me anything like the DNA I requested.
> For example chrUn:33,286,201-332,884,999 wont give me the genomic
> sequence just a lot of un-useful information.
> 
>  
> 
> FTP Downloading the chrUn and extracting this region should work but the
> numbering scheme for the ftp horse chrUn is clearly different from what
> the Genome browser uses.  I extract the correct numbered region and the
> desired sequence is not there.
> 
>  
> 
> Is there any way to extract 20,000bp region as DNA sequence using the
> UCSC genome browser? 
> 
>  
> 
> Glenn Soltes 
> 
> 
> 
> ******************************************************************* 
> 
> CONFIDENTIAL - This e-mail transmission and any documents attached to it may contain information that is confidential or legally privileged. If you are not the intended recipient, or a person responsible for delivering this transmission to the intended recipient, you are hereby notified that any disclosure, copying, distribution, or use of this transmission is strictly prohibited. If you have received this transmission in error, please immediately notify the sender and destroy the original transmission, attachments, and destroy any hard copies.
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome