[Genome] Custom Annotations locally

[Vinayak Kulkarni]

Hi,
I wanted to provide each gene annotations such as it's 5' UTR, 3' UTR, be
able to pull out information upstream/downstream say Xkb as per the
requirement. I know you guys have all this data on your browser tables but I
cannot find data annotated for predicted genes.
So essentially want I want is a way to annotate for a given gene (including
predicted genes), the genomic region (BLAT like o/p) with introns and exons
and be able to extract the 5' & 3' UTR along with given length of upstream
or downstream sequences. Can you please advice?
Thank you in advance,
Kind regards,
Vinayak.


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