[Genome] custom track submission

[Kendy Wong]

Hi,

 

We have previously submitted a custom track of copy-number variants (see
below) which is now publicly available at the UCSC goldenPath
customTracks site.

 

Copy-Number Variants
<http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg17&hgt.customText=http://g
enome-test.cse.ucsc.edu/goldenPath/customTracks/hg17/wong.bed>  (hg17)
accompanying the paper Wong, K. et al. A Comprehensive Analysis of
Common Copy-Number Variations in the Human Genome
<http://www.journals.uchicago.edu/AJHG/journal/issues/v80n1/44048/brief/
44048.abstract.html> . American Journal of Human Genetics 80:91-104
(2007).

 

We would like to include all the BAC clones on our array as well.
Please let us know which will be a better approach:

1)       Submit the whole array as a separate custom track and modify
the CNV track's description to alert users that both tracks can be
loaded simultaneously if desired.

2)       Amend the current CNV track to include the remaining BAC clones
from the array and color code these differently from the CNV clones.
(If this is the choice, should we submit just the remaining clones or
combine the two and resubmit a modified CNV track?)

3)       Or other suggestion?

 

Thanks,

Kendy

 

 

_______________________________

Kendy Wong, PhD

Post-doctoral fellow

Cancer Genetics & Developmental Biology

BC Cancer Research Centre

Vancouver, B.C. 

V5Z 1L3 Canada

604-675-8000 x7701

kwong at bccrc.ca