[Genome] Liftover question

[Shan Yang]

Hi,

I have a question about liftover. Sometimes, I get sequence spilt in 
the new assembly. But it does not give any further information.
If a sequence in an old assembly is broken into not too many segments 
in the new assembly (e.g. 2 segments), is it possible to get the two 
coordinates in the new assembly or I have to use old sequence to blat 
on the new assembly?

Thanks,

Shan Yang, PhD
Genome Biology Division, L-452
Chemistry,  Materials & Life Sciences Directorate (CMLS)
Lawrence Livermore National Laboratory
7000 East Ave, Livermore, CA, 94550

Ph:  925-422-7389
Fax: 925-422-2099