[Genome] refseq annotation tables

[Park, Richard]

To whom this may concern, 

Could you please point me towards the proper table where Refseq "NR_" are defined. I can not find the data in the refgene or reflink tables for human hg18. 

thanks, 
Richard


-----Original Message-----
From: Kayla Smith [mailto:kayla at soe.ucsc.edu]
Sent: Mon 7/23/2007 1:23 PM
To: Park, Richard
Cc: genome at soe.ucsc.edu
Subject: Re: [Genome] refseq annotation tables
 

Richard,

The refSeq IDs that start with XM or XP are "experimental" and we filter 
them out.   To find refSeq IDs that start with NP you can look to the 
protAcc column in the refLink table.

I hope this is helpful to you.  Please don't hesitate to contact us 
again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group


Park, Richard wrote:
> To whom this may concern, 
> 
> I have been trying to find the refseq information (via refGene table). To find refseq ids starting w/ XM, XP, or NP. I can not find the table that stores this data for hg18 (human). 
> 
> The browser recognizes the query, but i can not find the underlying data annotation table. 
> 
> If you could please point me to the specific table that has these annotations, that would be very helpful, 
> 
> thank you, 
> Richard Park
> 
> 
> 
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