[Genome] Knowngene and Refseq track in genobrowser

[Jennifer Cai]

Hello,

We have implemented the genome browser locally in our computer server.  In our geneome browser, we have Knowngene tracks,  Refseq gene track and SNP track, etc.   The data for Knowngene track and Refseq track are from UCSC, while the data of SNP track is from dbSNP.  Currently, the data of Knowngene and refseq gene in UCSC are using NCBI 36.1 build.  But the latest dbSNP data is 127 build (corresponds to NCBI 36.2 build).

If UCSC catch up NCBI 36.2 in future, will knowngene and refseq data are different between NCBI 36.1 build and NCBI 36.2 build?  

In our genome browser, can we use dbSNP 127 build (NCBI 36.2 build), while knowngene and refseq use NCBI 36.1?

Thanks,
/Jennifer





Department of Pathology
U.T. Southwestern Medical Center
6000 Harry Hines Blvd.
Dallas, TX  75390-9072

Phone: 214-648-4956
Email: jennifer.cai at utsouthwestern.edu