[Genome] clusterGenes

[Russell, Archie]

This program could be very useful, is there a longer description of what
it does and how?

Thanks,
Archie

-----Original Message-----
From: genome-bounces at soe.ucsc.edu [mailto:genome-bounces at soe.ucsc.edu]
On Behalf Of Galt Barber
Sent: Thursday, July 12, 2007 10:53 AM
To: Amit Indap
Cc: UCSC
Subject: Re: [Genome] clusterGenes


Yes, that appears to be the case.
It is using binKeeper to keep track of
growing cluster ranges and new elements
that overlap the cluster (by position)
are added to it.

-Galt


On Thu, 12 Jul 2007, Amit Indap wrote:

> Hi UCSC
>
> For the program clusterGenes from kent src, is it
> clustering genepred records based on how close they
> are to each other (in terms of assembly coordinates)?
>
> Thanks,
>
> Amit Indap
> Cornell University
>
>
>
>
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