[Genome] I can't search a range by rs# anymore!

Brooke Rhead rhead at soe.ucsc.edu
Wed Jul 11 16:54:51 PDT 2007


Hello Geoffrey,

Thanks for the compliments on the Browser.

You are correct that this behavior is caused by the additional listing 
of SNPs in the HapMap SNPs track, which is new on hg18 this week.  (And 
we just updated the search function on hg18 this morning!)

Another user also brought this problem to our attention last month (it 
is also an issue on hg17):

http://www.soe.ucsc.edu/pipermail/genome/2007-June/013947.html

The issue you are referring to is #2 our answer to that user.

Thank you for letting us know that it is affecting your work.  We are 
working on a fix for it right now, but I don't yet have an estimate for 
when it will be done.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Geoffrey Hom wrote:
> Hi,
> 
> First off, I love the UCSC Browser. Thank you for all your hard work!
> 
> Today I ran into a bug? I was trying to search by SNP rsIDs as a  
> range. For example,
> 
> rs6577551; 	rs12119878
> 
> That worked fine earlier today. But now it doesn't, because some SNPs  
> "aren't uniquely determined" because of the HapMap SNP track.
> 
> I don't know what happened, if it's on my end or your end, but I used  
> that SNP notation a lot and am sad to see it gone.
> 
> --Geoff
> 
> --------Geoffrey Hom (Postdoc, Lab of Tim Behrens, Genentech)
> --------geoffhom at gmail.com [Work: 650-225-7559, Cell: 612-481-0735,  
> Room 12280-7]
> 
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome


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