[Genome] quick question about the version/release date of the annotations

[wenzhong]

Hello Archana,

Thanks very much for the help! It is exactly what I was looking for.

Best regards,

Wenzhong


-----Original Message-----
From: Archana Thakkapallayil [mailto:archanat at soe.ucsc.edu] 
Sent: Tuesday, July 10, 2007 3:23 PM
To: wenzhong
Cc: genome at soe.ucsc.edu
Subject: Re: [Genome] quick question about the version/release date of the
annotations

Hello Wenzhong,

Assembly-specific track releases, updates, and release dates are noted 
in our Release Log at:
http://genome.ucsc.edu/goldenPath/releaseLog.html

The exact Ensembl release information is not given in the Release Log 
for hg18.  However, you could get this information by clicking into the 
track settings page for the Ensembl Gene track:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=ensGene

The refSeq data is updated once per week, usually on Sunday. As 
mentioned in the README:
ftp://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/README.txt

For the hg18 assembly:
UCSC Genes: release date ( 6 April 2007 )
Ensembl Genes: Build 43
RefSeq Genes: last modified date ( 8 Jul 2007 )

I hope this information helps.  If you have any further questions, 
please do not hesitate to write back to this list.

Regards,

Archana
UCSC Genome Bioinformatics Group


wenzhong wrote:
> Hello,
>
>  
>
> Can I please ask a quick question about the versions of the annotations in
> UCSC browser? For example, if I download the "Genes and Gene Prediction
> Tracks" using the Table Browser now, what would the corresponding versions
> or release dates of RefSeq (updated daily?), Ensemble (build 37 as stated
on
> the website or the current build 45?), and UCSC Known Genes (the latest
> version by Jim?)?
>
>  
>
> Thanks for the help!
>
>  
>
> -Wenzhong
>
>  
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>