[Genome] about GO (gene ontology)

[Ann Zweig]

Hello Pauhsi,

	To map from the knownGene table to the goId, you will be starting in 
the assembly database (hg18) then moving to the go database.  Here is a 
list of the relationships:

hg18.knownGene.id == hg18.kgXref.kgID

hg18.kgXref.spID == go.goaPart.dbObjectId

	Then then GO id is contained in that table here: go.goaPart.goId

	Please be sure to write back if this is not clear.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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pauhsi wrote:
> Hi
> 
> How do I map knownGene.txt (http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/knownGene.txt.gz) to GO number?
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