January 2007 Archives by subject

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Starting: Tue Jan 2 08:44:28 PST 2007
Ending: Wed Jan 31 21:53:22 PST 2007
Messages: 257

• [Genome] "Motifs to highlight" in "Base Position" track doesn't work   Henner Farin
• [Genome] "Motifs to highlight" in "Base Position" track doesn't work   Ann Zweig
• [Genome] (no subject)   Shiaoching Gong
• [Genome] (no subject)   Rachel Harte
• [Genome] 10,000,000 line limit   Damian Keefe
• [Genome] 10,000,000 line limit   Brooke Rhead
• [Genome] 10,000,000 line limit   Brooke Rhead
• [Genome] [Fwd: GoldenPath]   Rachel Harte
• [Genome] [Fwd: Re: buffer overflow]   Ann Zweig
• [Genome] [Fwd: sequence retrieval problem]   Kayla Smith
• [Genome] ABL2 inconsistency   Rachel Harte
• [Genome] about hg18_Build36   Jun Wang
• [Genome] about hg18_Build36   Fan Hsu
• [Genome] about hg18_Build36   Daryl Thomas
• [Genome] about hg18_Build36   Jun Wang
• [Genome] About snp126   pauhsi
• [Genome] About snp126   Rachel Harte
• [Genome] About snp126   Heather Trumbower
• [Genome] Accession in RefGene table   Phoenix Kwan
• [Genome] Accession in RefGene table   Kayla Smith
• [Genome] adding links to UCSC genome browser   asaf levy
• [Genome] adding links to UCSC genome browser   Rachel Harte
• [Genome] altsplicing conserved graphs   shepardp at uci.edu
• [Genome] altsplicing conserved graphs   Brooke Rhead
• [Genome] Annotation Display Problems   Ravikanth Metlapally
• [Genome] Annotation Display Problems   Ann Zweig
• [Genome] Automatically blast and annotation tools available?   Shan Yang
• [Genome] Automating web BLAT   Yuval Itan
• [Genome] Automating web BLAT   Rachel Harte
• [Genome] batch queries to BLAT   Douglas D. Rhoads
• [Genome] batch queries to BLAT   Rachel Harte
• [Genome] BED formatted files for liftOver   Tay Sen Kwan
• [Genome] BED formatted files for liftOver   Heather Trumbower
• [Genome] Best sync time   Sean Davis
• [Genome] Best sync time   Robert Kuhn
• [Genome] blat   omer haber
• [Genome] blat   Brooke Rhead
• [Genome] blat didn't work on 33mers   Yueming Ding
• [Genome] blat didn't work on 33mers   Jim Kent
• [Genome] blat didn't work on 33mers   Archana Thakkapallayil
• [Genome] BLAT output: how to interpret the numbers when the alignment happened on the negative strand? / Can I specify neg. strand counting in command-line version?   Anton Kratz
• [Genome] BLAT output: how to interpret the numbers when the alignment happened on the negative strand? / Can I specify neg. strand counting in command-line version?   Anton Kratz
• [Genome] BLAT output: how to interpret the numbers when the alignment happened on the negative strand? / Can I specify neg. strand counting in command-line version?   Kayla Smith
• [Genome] BLAT output: how to interpret the numbers when the alignment happened on the negative strand? / Can I specify neg. strand counting in command-line version?   Rachel Harte
• [Genome] BLAT Search Question   Emmanuel Kamberov
• [Genome] BLAT Search Question   Archana Thakkapallayil
• [Genome] Branch length of phylogenetic tree   Thomas Sandmann
• [Genome] Branch length of phylogenetic tree   Robert Kuhn
• [Genome] Branch length of phylogenetic tree   Robert Kuhn
• [Genome] Branch length of phylogenetic tree   Robert Kuhn
• [Genome] Browser question   Patrick Sullivan
• [Genome] Browser question   Brooke Rhead
• [Genome] buffer overflow   Gabriel Renaud
• [Genome] Can I remove a BLAT hit from the genome browser display?   Brooke Rhead
• [Genome] Can I remove a BLAT hit from the genome browser display?   Gordon Robertson
• [Genome] Cat Assembly Available in Genome Browser   Brooke Rhead
• [Genome] CCDS genes   Jittima Piriyapongsa
• [Genome] CCDS genes   Rachel Harte
• [Genome] CCDS hg16 archive   Rachel Harte
• [Genome] Clone question   Gorenstein, Julie
• [Genome] Clone question   Ann Zweig
• [Genome] colors of known genes track held in table   asaf levy
• [Genome] colors of known genes track held in table   Fan Hsu
• [Genome] Comprehensive annotation table for mRNA sequences   Alessandro Guffanti
• [Genome] Comprehensive annotation table for mRNA sequences   Ann Zweig
• [Genome] Converting Genome Coordinates   Katie F Wlaschin
• [Genome] Converting Genome Coordinates   Kate Rosenbloom
• [Genome] Custom browser, track, type=wiggle documentation?   Patrick Sullivan
• [Genome] Custom browser, track, type=wiggle documentation?   Brooke Rhead
• [Genome] data inconsistency?   Wei-Jen Chung
• [Genome] data inconsistency?   Brooke Rhead
• [Genome] Database queries   Jacob Glass
• [Genome] Database queries   Kayla Smith
• [Genome] definition of "good" pseudogene   Benjamin Berman
• [Genome] dm2 9way conservation downloads   Casey Bergman
• [Genome] dm2 9way conservation downloads   Archana Thakkapallayil
• [Genome] dm2 9way conservation downloads   Casey Bergman
• [Genome] dm2 9way conservation downloads   Robert Kuhn
• [Genome] dm2 9way conservation downloads   Hiram Clawson
• [Genome] dm2 9way conservation downloads   Ann Zweig
• [Genome] download of multialignment regions   Anil Jegga
• [Genome] download of multialignment regions   Archana Thakkapallayil
• [Genome] Downloading triCas2 genome assembly   Namshin Kim
• [Genome] Drosophila Affymetrix timecourse track ?   Ann Zweig
• [Genome] Drosophila phylogenetic analysis   Rachel Harte
• [Genome] ENCODE small indel data   Toby Andrew
• [Genome] ENCODE small indel data   Heather Trumbower
• [Genome] EST direction   Shah, Jyoti K.
• [Genome] EST direction   Rachel Harte
• [Genome] EST direction   Shah, Jyoti K.
• [Genome] EST direction   Rachel Harte
• [Genome] EST direction   Ann Zweig
• [Genome] File offsets in hg18.multiz17way table   Dexter Hadley
• [Genome] File offsets in hg18.multiz17way table   Brooke Rhead
• [Genome] filter by score ..   Ben Berman
• [Genome] filter by score ..   Kate Rosenbloom
• [Genome] Fwd: help please   Tim Hefferon
• [Genome] gbdb folder in UCSC browser mirror   Thomas Sandmann
• [Genome] gbdb folder in UCSC browser mirror   Galt Barber
• [Genome] gbdb folder in UCSC browser mirror   Hiram Clawson
• [Genome] GC percent gff   Lancaster, O.
• [Genome] GC percent gff   Hiram Clawson
• [Genome] Genome Browser Source Compile Error   Kelvin Andrews
• [Genome] Genome Browser Source Compile Error   Mark Diekhans
• [Genome] Genome Browser Source Compile Error   Hiram Clawson
• [Genome] gnf gene expression altlas 2   Noa Sela
• [Genome] gnf gene expression altlas 2   Kayla Smith
• [Genome] gnfAtlas2   Yael Altuvia
• [Genome] gnfAtlas2   Rachel Harte
• [Genome] gnfAtlas2   Rachel Harte
• [Genome] GTF custom track problem ..   Benjamin Berman
• [Genome] GTF custom track problem ..   Benjamin Berman
• [Genome] GTF custom track problem ..   Kate Rosenbloom
• [Genome] Hello UCSC Genome browser staff   ארז ליבנה
• [Genome] Hello UCSC Genome browser staff   Brooke Rhead
• [Genome] help   Zhang, Yuwei (NIH/NIA/IRP) [F]
• [Genome] help   Ann Zweig
• [Genome] help finding some drosophila alignments   Gerald Quon
• [Genome] help finding some drosophila alignments   Brooke Rhead
• [Genome] help on a cusom annotation   Baoqiang Cao
• [Genome] help on a cusom annotation   Hiram Clawson
• [Genome] help on a cusom annotation   Baoqiang Cao
• [Genome] help please   Tim Hefferon
• [Genome] help please   Kate Rosenbloom
• [Genome] help with custom tracks and colors (useScore)   Smith, David
• [Genome] help with custom tracks and colors (useScore)   Ann Zweig
• [Genome] help with display of Affymatrix option   xin.2.yuan at gsk.com
• [Genome] help with display of Affymatrix option   Heather Trumbower
• [Genome] Help with upstream .maf file   calhoujd at notes.udayton.edu
• [Genome] hg17 - tfnsConsFactors and tfbsConsSites   Reut Shalgi
• [Genome] hg17 - tfnsConsFactors and tfbsConsSites   Ann Zweig
• [Genome] hg17 - tfnsConsFactors and tfbsConsSites   Ann Zweig
• [Genome] how the blocks in the chain are organized?   Ann Zweig
• [Genome] How to figure out chromosome lengths   Ton, Carl C
• [Genome] How to figure out chromosome lengths   Kayla Smith
• [Genome] How to figure out chromosome lengths   Hiram Clawson
• [Genome] How to get alinged 3'UTR/downstream regions?   Cei Abreu-Goodger
• [Genome] How to get alinged 3'UTR/downstream regions?   Rachel Harte
• [Genome] How to order BACs for certain chromosomes   asem ali
• [Genome] How to order BACs for certain chromosomes   Ann Zweig
• [Genome] how to use peak height to show score in custom track   Rachel Harte
• [Genome] HUGO gene names to Build35 coordinates   Bingshan Li
• [Genome] HUGO gene names to Build35 coordinates   Fan Hsu
• [Genome] Inquiry   Susanne Lucae
• [Genome] Inquiry   hartera at soe.ucsc.edu
• [Genome] Inquiry   Susanne Lucae
• [Genome] Inquiry   Heather Trumbower
• [Genome] Inquiry about linking to UCSC Genome Browser   Shannon Conners
• [Genome] Inquiry about linking to UCSC Genome Browser   Rachel Harte
• [Genome] introns and exons   SotSo1234 at aol.com
• [Genome] introns and exons   Ann Zweig
• [Genome] Just a (trivial) question regarding the size of gaps....   Brooke Rhead
• [Genome] Just a (trivial) question regarding the size of gaps....   Jérôme Cavaillé
• [Genome] knownGene to Gene name (Gene Symbol)   Mathias Ehrich
• [Genome] knownGene to Gene name (Gene Symbol)   Fan Hsu
• [Genome] liftOver Messages   Tay Sen Kwan
• [Genome] liftOver Messages   Tay Sen Kwan
• [Genome] liftOver Messages   Brooke Rhead
• [Genome] liftOver Messages   Tay Sen Kwan
• [Genome] liftOver Messages   Brooke Rhead
• [Genome] Link between and the gene ontology database   Rachel Harte
• [Genome] Matching 'known genes' to geneIDs in NCBI   Su Yeon Kim
• [Genome] Matching 'known genes' to geneIDs in NCBI   Fan Hsu
• [Genome] Matching 'known genes' to geneIDs in NCBI   Greg Singer
• [Genome] Microsatellite markers   Tom H. Lindner
• [Genome] Microsatellite markers   Rachel Harte
• [Genome] More help with upstream .maf file   calhoujd at notes.udayton.edu
• [Genome] More help with upstream .maf file   Hiram Clawson
• [Genome] mRNA conservation + SNPs question   Andrew Johnson
• [Genome] Non-synonmyous snps   Dixon, Dr R.
• [Genome] Non-synonmyous snps   Heather Trumbower
• [Genome] phastCons "conservation" track   Benjamin Berman
• [Genome] phastCons "conservation" track   Brooke Rhead
• [Genome] PicTar target predictions, human   Mike Gilchrist
• [Genome] PicTar target predictions, human   Rachel Harte
• [Genome] Please advice with retrieving data   Brooke Rhead
• [Genome] problem in TFBS conserved track data   Asaf Levy
• [Genome] problem in TFBS conserved track data   Matt Weirauch
• [Genome] Problem with the test bed version of the server   Mike Mitchell
• [Genome] Problem with the test bed version of the server   Ann Zweig
• [Genome] Promoters? Match to RefSeq (insignificant???)   Kosi Gramatikoff
• [Genome] Promoters? Match to RefSeq (insignificant???)   Ann Zweig
• [Genome] Query   Fernando Suarez (U of T)
• [Genome] Query   Ann Zweig
• [Genome] question   Michael Nefedov
• [Genome] question   Robert Kuhn
• [Genome] Question   ZhouQi
• [Genome] Question   Heather Trumbower
• [Genome] Question   Nicole Soranzo
• [Genome] Question   Heather Trumbower
• [Genome] question   ZhouQi
• [Genome] question   Brooke Rhead
• [Genome] question about BACs shown in genome browser   Todd Anthony
• [Genome] question about BACs shown in genome browser   Archana Thakkapallayil
• [Genome] question about custom tracks   Ge Zhang
• [Genome] question about custom tracks   Archana Thakkapallayil
• [Genome] Question about tracks and duplicate entries   Todd Riley
• [Genome] Question about tracks and duplicate entries   Fan Hsu
• [Genome] Question about tracks and duplicate entries   Kayla Smith
• [Genome] Question on downloading homologs   Paulo Nuin
• [Genome] Question on downloading homologs   Ann Zweig
• [Genome] Questions about indexing in the .fa files   Todd Riley
• [Genome] Questions about indexing in the .fa files   Archana Thakkapallayil
• [Genome] random DNA sequence generator   Peter Scacheri
• [Genome] random DNA sequence generator   Brooke Rhead
• [Genome] random DNA sequence generator   Sean Davis
• [Genome] random DNA sequence generator   Sean Davis
• [Genome] Regarding Blat and Genome Browser   dhlee at buffalo.edu
• [Genome] Regarding Blat and Genome Browser   Brooke Rhead
• [Genome] RepeatMasker hg18 .align files   Michael Pheasant
• [Genome] RepeatMasker hg18 .align files   Rachel Harte
• [Genome] repStart, repEnd, repLeft in chrN_rmsk table   Casey Bergman
• [Genome] S. cerevisiae custom tracks for intron tiling array data   Jay Hesselberth
• [Genome] S. cerevisiae custom tracks for intron tiling array data   Rachel Harte
• [Genome] Sanger miRBase Target database   jglenn
• [Genome] Sanger miRBase Target database   Fan Hsu
• [Genome] SNP data extraction   Vinayak Kulkarni
• [Genome] SNP data extraction   Kayla Smith
• [Genome] snpRecombRate table   David Gordon
• [Genome] specifying mouse-over 'tooltip' values for custom tracks   Hiram Clawson
• [Genome] specifying mouse-over 'tooltip' values for custom tracks   Nina Thiessen
• [Genome] Strange alignments in the genome browser   Jan Koster
• [Genome] Strange alignments in the genome browser   Brooke Rhead
• [Genome] Table Browser   Zihua Hu
• [Genome] Table Browser   Brooke Rhead
• [Genome] Table Browser / Why are there LocusLink ID denoted genes on different strands/chromosomes?   Anton Kratz
• [Genome] Table Browser / Why are there LocusLink ID denoted genes on different strands/chromosomes?   Ann Zweig
• [Genome] Table browser query   Hansen, Gwenn
• [Genome] Table browser query   Ann Zweig
• [Genome] Table browser query   Ann Zweig
• [Genome] The GNF tables   Yael Altuvia
• [Genome] Trouble building overlapSelect   Cory Y. McLean
• [Genome] Trouble building overlapSelect: previous message truncated   Hiram Clawson
• [Genome] Trouble building overlapSelect: previous message truncated   Cory Y. McLean
• [Genome] turning on base position display options without using the web page interface   Nina Thiessen
• [Genome] turning on base position display options without using the web page interface   Rachel Harte
• [Genome] two records with the same accession in RefGene.txt   Phoenix Kwan
• [Genome] two records with the same accession in RefGene.txt   Rachel Harte
• [Genome] UCSC Cow Genome   João Fadista
• [Genome] UCSC Cow Genome   Brooke Rhead
• [Genome] UCSC Cow Genome   João Fadista
• [Genome] UCSC Cow Genome   Heather Trumbower
• [Genome] UCSC mouse genome browser problems   Cramer, Melissa J
• [Genome] UCSC mouse genome browser problems   Robert Kuhn
• [Genome] UCSC mouse genome browser problems   Brooke Rhead
• [Genome] Unplaced portions of the Human genome release   zayed albertyn
• [Genome] Unplaced portions of the Human genome release   Rachel Harte
• [Genome] Updates of annotaitions   Duhaime Johanne
• [Genome] Updates of annotaitions   Ann Zweig
• [Genome] Use of ENCODE project data   Philip M Terry
• [Genome] Use of ENCODE project data   Ann Zweig
• [Genome] Wiggle display of custom annotations   sandmann at embl.de
• [Genome] Wiggle display of custom annotations   Kate Rosenbloom
• [Genome] Wiggle display of custom annotations   Hiram Clawson
• [Genome] wrong genomic sequence for mse FBXL2   Kelly Hinkle
• [Genome] wrong genomic sequence for mse SRPK1   Kelly Hinkle
• [Genome] wrong genomic sequence for mse SRPK1   Heather Trumbower

Last message date: Wed Jan 31 21:53:22 PST 2007
Archived on: Wed Jan 31 21:54:00 PST 2007

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