[Genome] help on a cusom annotation

Hiram Clawson hiram at soe.ucsc.edu
Wed Jan 31 12:00:59 PST 2007


Good Morning Baoqiang:

You can do line graphs with the wiggle tracks by setting the graphType at points
and turn on the smoothingWindow.  For example, this custom track will
display lines:

browser position chr1:1-6000
track type=wiggle_0 name="line graph" graphType="points" smoothingWindow=16 visibility=full
chr1    1001    2001    0.80
chr1    3001    3501    0.50
chr1    4501    5051    0.99

--Hiram

Baoqiang Cao wrote:
> Dear all,
> 
> I'm looking for ways to display some desired information using genome browser. I haven't found any solution, you help for a start will be highly appreciated. The below is what I expect:
> I have:
> chromosome start stop p-value
> chr1  1001  2001 0.80
> ...
> I expect:
> display a horizontal line starting from chr1 1001 to chr1 2001, the y-value for this line is 0.80, and same for the rests of my data.
> 
> Are there any ways to get it? Thanks in advance!
> 
> Best,
>  Baoqiang


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