[Genome] Automatically blast and annotation tools available?

Shan Yang yang21 at llnl.gov
Wed Jan 31 11:00:38 PST 2007


Hi,

Here is our situation. We have a small database of genes. We have 
part of the sequence for each of them. One property of the database 
is the most recent common gene name of each entry. Since the gene 
names are constantly changing, we are wondering if there is any 
available tools in the genome browser to automatically blast our gene 
sequences and give the current gene annotation in batches?

Thanks a lot!

Shan

Shan Yang, PhD
Genome Biology Division, L-452
Chemistry,  Materials & Life Sciences Directorate (CMLS)
Lawrence Livermore National Laboratory
7000 East Ave, Livermore, CA, 94550

Ph:  925-422-7389
Fax: 925-422-2099


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