[Genome] RepeatMasker hg18 .align files

[Rachel Harte]

Dear Michael,

I can put these .align files out for you to download for hg18. I have
compressed them and most of them are about 50-350 Mb in size
for each chromosome. The .align files were created using contigs so the
coordinates in these files refer to contigs and not to chromosomes.
There is a file called liftAll.zip which gives the location of the contigs
on the chromosomes. liftAll.zip may be downloaded from:
http://hgdownload.cse.ucsc.edu/goldenPath/hg18/bigZips/

I will let you know the location from which the files may be downloaded.
Please let us know if you have further questions.

Rachel

Rachel Harte
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu


On Tue, 30 Jan 2007, Michael Pheasant wrote:

> Hi,
>
> I would like some (or all) of the .align files created in the
> RepeatMasking process for hg18 (or 17)  if they are still available.
> I dont know how large they are or how much they compress, even a
> chromosome or two, or just a class of alignments such as MIR* would be
> useful. If it is feasible, then I could get them by rsync or ftp as you
> prefer.
>
> Thanks,
>
> Mike Pheasant.
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>