[Genome] blat

[omer haber]

hello,
I tried to install blat on my linux ( I useing fedura core2 and I downloaded linuxReadhat7.3) , 
I opened the zip file , downloaded the relevent databases and formated it with formatdb from ncbi ( formatdb -i ciona_mrna.fasta -p F -o). 
but when run a query ( blat -t=dna -q=rna ciona_mrna.fasta Iputfile Outfile ) , the output that I get, is just the title 
(match   mis-    rep.    N's     Q gap   Q gap   T gap   T gap   strand .....).

I know that it's need to give me an alignment, because when I run it on the web and got good results.

can you help me pleace, what I need to do to get the same results as I got on the web ?

thanks,

Omer




 
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