[Genome] GC percent gff
Hiram Clawson
hiram at soe.ucsc.edu
Thu Jan 25 09:35:11 PST 2007
Good Morning Owen:
The GC percent in 5 base window graph is not a gff type of track.
It is a wiggle type of track. You can create wiggle type custom
tracks by following the information about wiggle tracks at:
http://genome.ucsc.edu/goldenPath/help/wiggle.html
Note, the variableStep and fixedStep formats for this data are much
more efficient than the bed-like format. So use those formats if
you can.
I'm curious, what exactly were you working with that gave you the
idea of gff format for this data ?
--Hiram
Lancaster, O. wrote:
> Hello
>
> I am trying to get an example of the gff used to draw the GC percent in 5 base windows
> graph on the browser. I am wanting to add a similar custom track myself
> (basically a bar chart) but when I go to the table options to try and export the
> gff there is no option to allow me to export it. If possible could you provide
> me with an example gff for a track such as this or point me in the right
> direction as how to do something similar. Hope you can help!
>
> Regards
>
> Owen
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