[Genome] dm2 9way conservation downloads

Casey Bergman casey.bergman at manchester.ac.uk
Tue Jan 16 14:27:55 PST 2007


Hi Archana -

Thanks for this information.  I should have been more clear in saying  
that I was interested in a stable link to data for the 9way most  
conserved track.  There appears to be no way to download the  
phastConsElements9way.sql & phastConsElements9way.txt.gz files, even  
at the test site.

Is it ok to reference the following URL to the test server as a  
stable link in a manuscript?
<http://genome-test.cse.ucsc.edu/cgi-bin/hgTrackUi? 
g=phastConsElements9way>

Best,
Casey


On 16 Jan 2007, at 20:39, Archana Thakkapallayil wrote:

> Hello Casey,
>
> The data for the 9-way alignment with dm2 are still available on  
> our downloads server, here:
> http://hgdownload.cse.ucsc.edu/downloads.html#fruitfly
>
> Also, the 9-way alignment is available on our test server at:
> http://genome-test.cse.ucsc.edu/
>
> I hope this information is helpful to you. If you have further  
> questions, please do not hesitate to contact us again.
>
> Regards,
>
> Archana
> UCSC Genome Bioinformatics Group
>
> Casey Bergman wrote:
>> Hi -
>>
>> I've noticed that the 15way conservation track has now replaced  
>> the  9way track for dm2, but that the 9way track does appear  
>> available for  download any longer.  Is this correct?  We have a  
>> project that used  this data, and it would be good to have a  
>> stable link to this data.   Any ideas on how this might be done?
>>
>> All the best,
>> Casey Bergman, Ph.D.
>> Faculty of Life Sciences
>> University of Manchester
>> Michael Smith Building
>> Oxford Road, M13 9PT
>> Manchester, UK
>>
>> Tel:  +44-(0)161-275-1713
>> Fax: +44-(0)161-275-5082
>> skype: caseymbergman
>>
>> Email: casey.bergman at manchester.ac.uk
>> Web: http://www.bioinf.man.ac.uk/bergman/
>>
>>
>> _______________________________________________
>> Genome maillist  -  Genome at soe.ucsc.edu
>> http://www.soe.ucsc.edu/mailman/listinfo/genome
>>



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