[Genome] Strange alignments in the genome browser
Jan Koster
koster.jan at gmail.com
Thu Jan 11 04:26:51 PST 2007
Hi,
I've downloaded the all_mrna.txt.gz(date:2007-01-07) file for the HG18
build today (2007-01-10) and found a number of perculiar alignments.
In some cases the strand information does not seem to be correct! I
encounter (++) 10 times and (+-) 22 times.
Is this an error, or am I missing something here?
Below is 1 example as can be found via the genome browser.
AF242868 Alignments
This aligns in multiple positions. Click on a hyperlink to go to
tracks display at a particular alignment.
SIZE IDENTITY CHROMOSOME STRAND START END cDNA START END TOTAL
------------------------------------------------------------------------------
883 100.0% 17 + 35761724 35766003 AF242868 689 1571 1572
883 100.0% 17 ++ 35761724 35766003 AF242868 689 1571 1572
Kind regards,
Jan Koster
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