[Genome] HUGO gene names to Build35 coordinates

[Fan Hsu]

Hi Bingshan,

I generated a table for someone not long ago, which you might be able to
use.
It is at:

http://www.soe.ucsc.edu/~fanhsu/bigKgGo.tab

This table is generated by the following query:

'select kgId, spId, geneSymbol, mm.target, term.acc, goaPart.aspect,
term.name, k.description, kg.* from goaPart,term, hg18.kgXref k,
hg18.knownGene kg, hg18.mmBlastTab mm where goaPart.dbObjectId = k.spId and
goaPart.goId = term.acc and kg.name=k.kgId and kgId=mm.query'

You could go to our public MySQL server and tailer the above query to get
data to suit
your need.

Fan.
-----Original Message-----
From: genome-bounces at soe.ucsc.edu [mailto:genome-bounces at soe.ucsc.edu]On
Behalf Of Bingshan Li
Sent: Monday, January 08, 2007 11:58 AM
To: genome at soe.ucsc.edu
Subject: [Genome] HUGO gene names to Build35 coordinates


Hi,

I am looking a table to map HUGO gene names to their coordinates on
Build35. Is there such a table? If not, can I have multiple tables
with sufficient information so that I can get the coordinates of HUGO
gene names?

Thanks a lot!

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