[Genome] Table browser query

[Ann Zweig]

Hello again, Gwenn,

	Sorry, my fingers got away from me there!

	I was about to tell you about a supplemental tool that is being developed by 
the folks at Penn State.  The Galaxy server there provides access to all of the 
UCSC data.  It is capable of more complicated joins and intersections.

http://main.g2.bx.psu.edu/

	Start with the "get data" link, then choose "UCSC Main Table Browser".  You 
should be able to complete your query using this tool.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

	



Ann Zweig wrote:
> Hello Gwenn,
> 
>     It is not possible to use the UCSC Table Browser to do this 
> intersection. However, there is a
> 
> 
> 
> 
> Hansen, Gwenn wrote:
>> Is there a way that I can use the Table Browser to obtain a dataset
>> showing all mouse known genes/Refseq/mRNAs that intersect with gene trap
>> sequence alignments? (the IGTC track)
>>  
>> Ideally I would like to output a table with these fields:  gene name,
>> gene accession, entrez id, chr, IGTC gene trap sequence accession, IGTC
>> alignment position start/end.
>>  
>> Thanks,
>>  
>> Gwenn
>>
>>
>>
>> The contents of this communication, including any attachments, may be 
>> confidential, privileged or otherwise protected from disclosure.  They 
>> are intended solely for the use of the individual or entity to whom 
>> they are addressed.  If you are not the intended recipient, please do 
>> not read, copy, use or disclose the contents of this communication.  
>> Please notify the sender immediately and delete the communication in 
>> its entirety.
>> _______________________________________________
>> Genome maillist  -  Genome at soe.ucsc.edu
>> http://www.soe.ucsc.edu/mailman/listinfo/genome
>