[Genome] question

[Robert Kuhn]

Dr. Nefedov,

We do not have RFLP information on the browser.  The best 
approach I could suggest using our software would be to 
guide an experimental approach.  By turning on the tracks 
in the Variation and Repeats section, specifically Repeat 
Masker, Simple Repeats and Microsatellites, you can see where 
candidate RFLP regions lie.

Using the Restiction Enzymes track, you can see where
restiction enzymes map to the reference assembly and could 
design experiments to determine whether the repeat regions are 
useful to you as RFLPs.  Note that you can limit the Restriction
Enzyme track to enzymes of your choice using the configuration
page.  Click the track name link or the minibutton to the left
of the track in the browser display.

Note that the UCSC mm8 database contains only the reference strain
C57BL/6J.

best wishes,

			--b0b kuhn
			ucsc genome bioinformatics group


> From genome-bounces at soe.ucsc.edu  Wed Jan  3 17:19:16 2007
> To: "genome at soe.ucsc.edu." <genome at soe.ucsc.edu>
> Subject: [Genome] question
> 
> How to find RFLPs in mouse mm8, chr12:57,612,909-57,630,019 ?
> 
>  
> 
>  
> 
> Dr. Mikhail Nefedov, 
> BACPAC Resources, 
> Children's Hospital Oakland 
> Research Institute (CHORI), 
> Bruce Lyon Research Building, Room 203.
> 747 - 52nd street, Oakland, CA94609
> Phone: 510-428-3885 ext: 5799 
> Fax: 510-450-7951 
> 
>  
> 
>  
> 
> _______________________________________________
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>