[Genome] Wiggle display of custom annotations

Kate Rosenbloom kate at soe.ucsc.edu
Tue Jan 2 10:10:40 PST 2007


Hello Thomas,

There is no defined limit for the size of a custom track
file.  However in practice, the file upload can be limited by the
speed of your internet connection. I can check for
other problems if you can provide me (email me directly)
with the URL for your custom track file.

   Cheers,
	Kate
---
Kate Rosenbloom
Software Developer
UCSC Genome Bioinformatics

sandmann at embl.de wrote:
> Dear UCSC genome browser team,
> I have tried to upload a medium sized custom annotation file (ca. 42 Mb
> uncompressed) via ftp (as .gz file) to the Genome browser for display with the
> Drosophila genome. The file contains several .wiggle tracks, together ca.
> 780.000 lines. The last track in the file is not displayed properly, most of
> the chromosomes are reported to contain "no data". This is not due to the file
> format (upload to a local version of the browser is fine), so I was wondering
> if there is a size/line limit on the custom annotation files or whether this
> might be another problem you could point out to me.
> 
> Thank you !
> Thomas
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome



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