[Genome] The method of conserved TFBS prediction

[Jim (Chun-Chi Liu)]

Dear UCSC,

I am studying tfbsConsSites dataset in hg18.
The method of conserved TFBS prediction is described at
http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=86043462&hgta_doSchemaDb=hg18&hgta_doSchemaTable=tfbsConsSites 
I think it is a great method.

Please allow me to ask some question as follows:
1. Could you provide the executable program (or source code) for conserved TFBS prediction?
2. Is there any publication that reports this TFBS prediction method?
2. Do you have plan to apply this method to the sequences of evolutionary conservation in 17 vertebrates?

Best regards,

Jim (Chun-Chi Liu)
Email: ccliu at pie.com.tw
Homepage: http://biochip.nchu.edu.tw/ccliu/
Molecular and Computational Biology
University of Southern California