[Genome] decode identifiers on genome graphs

[Ann Zweig]

Hello Horia,

	Yes, you can upload deCODE markers to Genome Graphs.  You need to set up your 
input file like so with the name of the deCODE marker and then the associated value:

D0S14950 1
D0S14951 2
D0S14951 3
D0S14951 1
D0S17713 2
D0S17713 3
D0S17714 1
D0S17714 2
D0S17714 3

	The Genome Graphs tool will map those marker names to the stsMap table in the 
assembly.  Once you return to the Genome Graphs tool, simply choose your data 
set name from the drop-down list and it will be graphed by the tool.  For more 
details on using the Genome Graphs tool, please see the User's Guide:

http://genome.ucsc.edu/goldenPath/help/hgGenomeHelp.html

	If this does not answer your question, please don't hesitate to write back to 
the list.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu



Stanescu, Horia (NIH/NHGRI) [F] wrote:
> Greetings,
> 
> Is there a possibility to upload a STS marker list with decode
> identifiers  (eg D1S456 etc) on genome graphs?
> 
> If not how can it be transformed in a list of accepted names/identifiers
> (short of doing it manually one-by-one)?
> 
> Thank you,
> 
> Horia Stanescu
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome