[Genome] A question about UCSC genome brower

liaojy liaojy at mail2.sysu.edu.cn
Fri Feb 9 02:55:17 PST 2007


Hi,
         I encounter a problem when I used UCSC genome browser. I
searched ZHX3 gene in human genome, and then entered the "Human Gene
ZHX3 Description and Page Index" PAGE (URL:
http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=NM_015035
<http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=NM_015035&hgg_prot=ZHX3_
HUMAN&hgg_chrom=chr20&hgg_start=39240502&hgg_end=39362153&hgg_type=known
Gene&db=hg18&hgsid=85816915%20TITLE>
&hgg_prot=ZHX3_HUMAN&hgg_chrom=chr20&hgg_start=39240502&hgg_end=39362153
&hgg_type=knownGene&db=hg18&hgsid=85816915%20TITLE=). In "Gene Ontology
(GO) Annotations with Structured Vocabulary", it has 12 GO terms. I
searched ZHX3 in GO database(http://www.godatabase.org
<http://www.godatabase.org/> ), I only got 4 terms, they were
"nucleus","protein binding","transcription factor activity","negative
regulation of transcription, DNA-dependent", Why GO database search
result is inconsistent with UCSC genome brower result?
 
Sincerely,
Liaojianyou


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