[Genome] Custom tracks at ucsc

[Donna Karolchik]

hi Bob,

Thanks for contacting us. We are definitely interested in 
considering this data set for inclusion in the Genome Browser. We 
will need the data formatted in one of our standard file formats 
(see http://genome.ucsc.edu/FAQ/FAQformat), the URL(s) for the 
linkout, and the text for each of the sections in a full 
description page (here is the URL for one, or see the Genome 
Browser for many examples: 
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&c=chrX&g=genomicSuperDups). 
Due to our large number of ongoing projects, we will need the data 
sufficiently in advance of your publication date to schedule 
engineering time -- please get it to us as soon as early as 
possible. You can contact me directly with future correspondence.

Happy holidays,
-Donna

-----------------------------------
Donna Karolchik
Genome Browser Project Manager
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

----- Original Message ----- 
From: "bob stephens [contr]" <bobs at ncifcrf.gov>
To: <genome at soe.ucsc.edu>
Cc: "David Symer" <symerd at mail.nih.gov>
Sent: Friday, December 21, 2007 3:56 AM
Subject: [Genome] Custom tracks at ucsc


>
> Hello,
>
> We have put together a dataset of indels (structural variations) 
> for the
> mouse genome. The data were derived by trace alignment using 
> mouse strains
> with the reference genome and thus complement data obtained by 
> other methods
> such as mate analysis, CGH hybridization, SNP analysis etc. We 
> will soon
> submit the work and would like to make the data available at 
> ucsc as soon as
> it is accepted. Ideally, we would like to then link the data 
> back to out
> in-house resource that provides additional details. Is there 
> anything else
> we need to do to get ready for that submission beside formatting 
> the data
> accordingly"
>
> Thanks,
>
> Bob
>
> Robert M. Stephens (contractor)
> Manager, Bioinformatics Support Group
> Advanced Biomedical Computing Center
> SAIC-Frederick/NCI-Frederick
> Building 430 Room 233
> PO Box B
> Frederick, MD., 21702
> ---------------------------------------------------------
> 301-846-5787 (voice)
> bobs at ncifcrf.gov (email)
>
>
>
>
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>