[Genome] Tracks showing recombination hotspots in the HapMap and Perlegen data sets

[Robert Kuhn]

Kelly,

The image in the paper was produced use the hg17 browser.  Not
all those tracks are available yet on the latest (hg18) assembly.

For either assembly, you can turn on the hapMapLD (and related) tracks
by finding the control in the Variation and Repeats section below the 
browser image and selecting "full" from the pulldown menu.

Here are two sessions showing the information for hg17 and hg18,
respectively:

http://genome.cse.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Kuhn&hgS_otherUserSessionName=hg17_hapMapLD

http://genome.cse.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=Kuhn&hgS_otherUserSessionName=hg18_hapMapLD


If this does not answer your question completely, please feel free
to contact the list again.

best wishes,
				--b0b kuhn
				ucsc genome bioinformatics group


> From genome at soe.ucsc.edu  Thu Dec 13 08:00:25 2007
> To: genome at soe.ucsc.edu
> Subject: [Genome] Tracks showing recombination hotspots in the HapMap and
>  Perlegen data sets
> 
> The default Genome Browser does not have the tracks for showing the 
> recombination hotspots in the HapMap and Perlegen data sets.  I have 
> seen these tracks in publications: BRIEFINGS IN BIOINFORMATICS.
> VOL 7. NO 3. 211-224.  Can you please tell me how to set the browser 
> on my computer so that I can view these tracks.
>  
> Best,
>  
> Kelly Frazer
>  
>  
> 
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