[Genome] UCE Custom Track

[Ann Zweig]

Hello again, Pat,

	Thanks for forwarding the link.  We will get that fixed.

	As for using the UCE data, you can create the Custom Track using the data set 
within the UCSC Genome Browser.  I will walk you through it.  If you get stuck 
you can read more about Custom Tracks here: 
http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks

1. Open the Genome Browser and choose the hg17 assembly (May 2004)
2. Press the "add custom tracks" button.
3. Enter the URL of the data into the "Paste URLs" box: 
http://www.soe.ucsc.edu/~jill/ultra.hg17.track
Then press 'submit'.
4. From the Manage Custom Tracks page, press "go to genome browser" button.  The 
UCE track will be displayed in red near the top of the tracks image.


Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu



Gonzales, Patrick R. wrote:
> This is the link:
> 
> http://www.soe.ucsc.edu/~jill/ultra.html
> 
> I don't know how to format and use the data from the link you sent,
> regarding entering that data as a custom track. 
> 
> -----Original Message-----
> From: Ann Zweig [mailto:ann at soe.ucsc.edu] 
> Sent: Tuesday, December 11, 2007 12:11 PM
> To: Gonzales, Patrick R.
> Cc: genome at soe.ucsc.edu
> Subject: Re: [Genome] UCE Custom Track
> 
> Hello Pat,
> 
> 	Can you please tell me what web page this "supplemental info"
> link is on?  That 
> way I can look into correcting the link itself.
> 
> 	Until then, if you follow the second link in your email, you
> will find the 
> data.  http://www.soe.ucsc.edu/~jill/ultra.hg17.track
> 
> 
> Regards,
> 
> ----------
> Ann Zweig
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu
> 
> Please feel free to search the Genome mailing list archives by visiting
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> list.
> 
> 
> Gonzales, Patrick R. wrote:
>> HI, I'm trying to add the data from Bejerano's UCE paper to the UCSC
>> browser, but the link from the supplemental info is giving me this
>> error: Your URL "http://www.cse.ucsc.edu/~jill/ultra.hg17.track"
>> resulted in a redirect message (HTTP status code 302 Found). 
>> Sorry, redirects are not supported. Redirection location:
>> http://www.soe.ucsc.edu/~jill/ultra.hg17.track 
>>
>> Please help.
>>
>> Pat
>>
>>
>> Patrick R. Gonzales, MS
>>
>> Development Technologist
>> Cytogenetics Array CGH
>> Mayo Clinic
>> Hilton 932
>> (507)284-8338
>> gonzales.patrick at mayo.edu 
>>
>> _______________________________________________
>> Genome maillist  -  Genome at soe.ucsc.edu
>> http://www.soe.ucsc.edu/mailman/listinfo/genome