[Genome] gnf1m expression data

[Kayla Smith]

Hello Chris,

The table:

hgFixed.gnfMouseAtlas2MedianExps has the tissue information you are
looking for.

Here are two previously answered mailing list questions on the topic:

http://www.soe.ucsc.edu/pipermail/genome/2005-June/007616.html
http://www.soe.ucsc.edu/pipermail/genome/2007-August/014407.html

Kayla Smith
UCSC Genome Bioinformatics Group

On Mon, 10 Dec 2007 chris11 at helix.nih.gov wrote:

> Hi,
> while downloading expression data associated with gnf1m probes from the
> ucsc genome browser, I am unable to find information on the tissue of
> origin for each expression value.
> For example, I can download what follows:
> #mm9.affyGnf1m.qName	hgFixed.gnfMouseAtlas2All.expScores
> gnf1m06313_a_at	10,21,2,2,4,10,9,1,9,3,1,2,1,3,1,1,4,28,1,2,6,12,2,2,3,3,1,2,1,8,1,3,39,5,3,4,2,1,58,142,8,1,9,3,4,16,48,4,23,2,5,5,3,4,7,9,2,18,1,2,4,5,1,2,4,12,16,11,4,0,1,1,13,2,1,8,2,25,61,9,1,5,2,13,32,28,1,2,6,2,2,1,16,6,30,3,7,27,15,3,3,20,804,1488,5,1,1,4,5,5,5,4,4,0,10676,13278,10842,9280,18,5,3,4,
>
> The hgFixed.gnfMouseAtlas2All.expScores column does not state from which
> tissue each of the comma-separated values had originated (there should be
> 61 distinct tissues with 2 replicates each). Could you help me find that
> information?
> Many thanks,
>
> Chris Ottolenghi
>
> Genetics, NIA/Baltimore
>
>
>
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