[Genome] Human Genome Graphs Upload Fails

[Ann Zweig]

Hello Nicki,

	When I reproduce your steps exactly as you have stated them, the upload 
also fails for me.  I'm not sure why that is.  However, when I try the 
same thing without completing the following fields, it works fine:

file format:
markers are:
column labels:

	Please try it this way (let the tool choose 'best guess' for those 
fields for you) and see if it works.  If it doesn't, please write back 
to the list and we will troubleshoot with you.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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Nicki Tiffin wrote:
> Hi,
> 
> I'm trying to upload a list of human SNP rs ids for display in "Human Genome Graphs".
> 
> I've prepared a tab-delimited file with rs_id (tab) p_value, contains about 200 snp ids and looks like:
> 
> rsid sig
> rs11738115 0.001
> rs11739020 0.001
> rs11740375 0.001
> rs11747896 0.001
> rs11750464 0.001
> 
> I fill in the values:
> clade: vertebrate
> genome: Human
> assembly: Mar.2006
> 
> I click on upload, and fill in:
> name of dataset: AS001
> description: AS001
> file format: tab delimited
> markers are: dbSNP rsID
> column labels: first row
> 
> I leave the rest to default
> I use 'browse' to specify the filename (C:/path/AS001snps.txt) and 'submit'.
> 
> I get returned: 
> "Data Upload Complete (0bytes)
> These data are now available in the drop-down menus on the main page for graphing"
> I click on OK.
> 
> My data is not listed in the graph drop-down box.
> 
> I'm using: 
> 
> Web browser: Internet Explorer 7.0
> OS: Windows XP
> 
> I don't know how to start troubleshooting this failure to upload the data (I have tried using a different input file with approx 8000 snps, same result), any advice would be most welcome.
> Thanks,
> Nicki
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