[Genome] anything can I do with mm5 data?

[Ann Zweig]

Hello Weike,

	First of all, let me apologize for taking so long to answer your 
question.  You are correct that there is no liftOver from mm5 directly 
to mm9.  However, you can do a double-lift from mm5 to mm8 (Feb 2006), 
and then from mm8 to mm9.  This should give you the results you need.

	I hope this information is helpful to you.  Please don't hesitate to 
contact the mail list again if you require further assistance.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu



Weike Mo wrote:
> Hi,
> 
> I am looking at the FANTOM3 data set of RIKEN. However, to my surprise,
> they only have the newest annotation to mm5. Is there any program I can
> use for transform mm5 data sets to mm9 annotation? I can not find any
> chain file for liftOver for this transformation. Thanks very much.
> 
> Weike Mo
> 
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