[Genome] Finding orthologous genes

[Keren Alice Avital]

 First of all thank you for the quick response.If i understand correctly, first i need to find an ortologue human gene, andd then i can find te ortologue gene.But I need to find ortologue genes to pseudogenes that DONT have homologu human genes... thanks,keren> Date: Mon, 20 Aug 2007 15:31:32 -0700> From: kayla at soe.ucsc.edu> To: z_avital at hotmail.com> CC: genome at soe.ucsc.edu> Subject: Re: [Genome] Finding orthologous genes> > > Hello Keren,> > Within many species (human, mouse, rat...) we have xxBlastTab tables > which try to combine chains with BLAT homology searching to arrive at a > set of true orthologs across-species.> > To find orthologs, first you would have to get a mapping from your > pseudogene to a human knownGene. Then you could go from that to another > species via one of the xxBlastTab tables.> > I hope this information is helpful to you. Please don't hesitate to > contact us again if you require further assistance.> > Kayla Smith> UCSC Genome Bioinformatics Group> > > > > > Keren Avital wrote:> > Hello, > > > > I have several hundreds of human pseudogenes, and I like to find known functonal orthologous genes in other species.> > What is the best way to find functonal orthologous gene?> > > > Thanks, > > Keren> > _______________________________________________> > Genome maillist - Genome at soe.ucsc.edu> > http://www.soe.ucsc.edu/mailman/listinfo/genome> 

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