[Genome] BLAT result viewing

[Kayla Smith]

Yu,

To replicate the results from the web version of BLAT, please see this FAQ:

http://genome.ucsc.edu/FAQ/FAQblat#blat5

I hope this answers your question.  Please don't hesitate to contact us 
again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group


Yu Zhou wrote:
> Dear Developers,
> 
> I have done local BLAT for hundreds of sequences. How to produce the same
> Result Page as Web BLAT? In other words, how to produce the linked page
> "details" from locally obtained "psl" files? How to generate the " Blat
> Sequence track" in the linked page "browser"? Are functions all in the file
> /kent/src/webBlat.c? BLAT Search Results
> 
>    ACTIONS      QUERY           SCORE START  END QSIZE IDENTITY CHRO
> STRAND  START    END      SPAN
> ---------------------------------------------------------------------------------------------------
> browser <http://genome.cse.ucsc.edu/cgi-bin/hgTracks?position=chr1:41055659-41055683&db=hg18&ss=../trash/hgSs/hgSs_genome_7db6_969e50.pslx+../trash/hgSs/hgSs_genome_7db6_969e50.fa&hgsid=96362880>
> details <http://genome.cse.ucsc.edu/cgi-bin/hgc?o=41055658&g=htcUserAli&i=../trash/hgSs/hgSs_genome_7db6_969e50.pslx+..%2Ftrash%2FhgSs%2FhgSs_genome_7db6_969e50.fa+seq1&c=chr1&l=41055658&r=41055683&db=hg18&hgsid=96362880>
> seq1              25     3    27    27 100.0%     1   -   41055659
> 41055683     25
> 
> 
> Thanks a lot in advance!
> 
> 
>