[Genome] C. elegans assembly ce3

[Nathan Gaddis]

I have performed a tiling array analysis using the C. elegans Tiling 1.0R
Array, which has over 3 million 25-mer probes covering the entire
non-repetitive genome.  The probes used in this array are derived from C.
elegans assembly ce3.  I have been trying to annotate the results of this
analysis (Affy does not provide an annotation file) but have run into the
problem that the annotations for both ce2 and ce4 are slightly shifted in
certain areas relative to ce3.  This presents problems since I am trying to
map the genome positions of the probes to specific exons.  Ideally what I
need are the following data dumps from ce3: 1) a GTF file for the entire
genome (track: WormBase Genes, table: sangerGene) and 2) a BED file for the
entire genome with one BED record per exon (track WormBase Genes, table:
sangerGene).  Is there any way to get a hold of these data.  Thanks.

 

Nathan Gaddis