[Genome] phastCons for mm8

[Hiram Clawson]

Good Afternoon Mia:

The fixed step wiggle input format is also described at this URL:
http://genome.ucsc.edu/goldenPath/help/wiggle.html

--Hiram

Sung, Myong-Hee (NIH/NCI) [E] wrote:
> Hi,
> 
> I want to download phasCons conservation scores for the mouse genome
> mm8.   A look at the chr19 file shows the first few lines starting as
> below:
> 
> fixedStep chrom=chr19 start=3000794 step=1
> 	
> 0	
> 0	
> 0	
> 0	
> 0	
> 0.001	
> 0.001	
> 0.001	
> 
> Could you tell me what the column description means?  The rows
> correspond to genomic bp positions progressing by a single base from
> start to end of chromosome 19?
> I looked around the santa cruz site, including the table annotation
> descriptions, but couldn't find the answer.  
> 
> I'd appreciate your help.
> 
> Mia
> 
> 	Myong-Hee Sung, Ph.D.
> 	Laboratory of Receptor Biology and Gene Expression
> 	National Cancer Institute, NIH
> 	41 Library Drive, Bldg 41, Rm B602
> 	Bethesda, MD 20892
> 
> 	Office: 301-402-0364
> 	Fax: 301-496-4951
> 	email: sungm at mail.nih.gov
> 	http://ccr.cancer.gov/staff/staff.asp?profileid=11633
> 
> 
> _______________________________________________
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