[Genome] phastCons for mm8

Sung, Myong-Hee (NIH/NCI) [E] sungm at mail.nih.gov
Mon Aug 13 11:54:14 PDT 2007


Hi,

I want to download phasCons conservation scores for the mouse genome
mm8.   A look at the chr19 file shows the first few lines starting as
below:

fixedStep chrom=chr19 start=3000794 step=1
	
0	
0	
0	
0	
0	
0.001	
0.001	
0.001	

Could you tell me what the column description means?  The rows
correspond to genomic bp positions progressing by a single base from
start to end of chromosome 19?
I looked around the santa cruz site, including the table annotation
descriptions, but couldn't find the answer.  

I'd appreciate your help.

Mia

	Myong-Hee Sung, Ph.D.
	Laboratory of Receptor Biology and Gene Expression
	National Cancer Institute, NIH
	41 Library Drive, Bldg 41, Rm B602
	Bethesda, MD 20892

	Office: 301-402-0364
	Fax: 301-496-4951
	email: sungm at mail.nih.gov
	http://ccr.cancer.gov/staff/staff.asp?profileid=11633




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