[Genome] UCSC Gene set

[Brooke Rhead]

Hello Keith,

We kept the same table name (knownGene) when we created the new UCSC 
Genes set, so "knownGene.txt.gz" is the file you are looking for.  The 
old Known Genes set for the human March 2006 assembly is now called 
"knownGeneOld2.txt.gz".  (There are a lot of dependencies on the 
knownGene table in the Genome Browser, so it would have been more 
difficult and confusing to switch to a new name.)

I hope this clears up any confusion.

--
Brooke Rhead
UCSC Genome Bioinformatics Group




Keith Satterley wrote:
> Hi and thanks for a fantastic service at UCSC,
> 
> You describe the New UCSC Gene Prediction Set Release of 6 April 2007 on:
> 
> http://genome.ucsc.edu/google/goldenPath/newsarch.html
> 
> as the next generation of the known Genes set.
> 
> I can find the KnownGene.txt.gz file at:
> 
> ftp://hgdownload.cse.ucsc.edu//goldenPath/hg18/database
> 
> Is there a similar file available for the new UCSC Gene set, and if so can you 
> tell me the name of the file, as I can't see a file named UCSCGenes.txt.gz or 
> similar,
> 
> cheers,
> 
> Keith
> 
> ========================
> Keith Satterley
> Bioinformatics Division
> The Walter and Eliza Hall Institute of Medical Research
> Parkville, Melbourne,
> Victoria, Australia
> ph: +61 3 9345 2628
> mob:+61 4 2570 0419
> email:keith at wehi.edu.au
> =======================
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