[Genome] Refseq START and END sites

[Kayla Smith]

Hello Vinayak,

The Table Browser ("Tables" on the blue bar on the top of the page) can 
be used to retrieve this information from the refGene table.  Use the 
following options:


clade: Vertebrate
genome: Human
assembly: Mar. 2006
group: Genes and Gene Prediction Tracks
track: RefSeq Genes
table: refGene
region: select "genome"
output format "selected fields from primary and related tables"
click "get output"

Now you can choose which fields from the refSeq table you'd like to 
retrieve.  Then select "get output" again.


I hope this is helpful to you.  Please don't hesitate to contact the 
mailing list again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group


Vinayak Kulkarni wrote:
> Hi,
> I was wondering if using your browser tables I could pull out information of
> the start site and end site co-ordinates within the refseq transcript ( in
> terms of positions within the refseq) for all human coding genes.
> Could you please help me grab that data from your browser tables.
> Thank you,
> Vinayak.
> Translational Research,
> UT Southwestern Medical Center at Dallas.