[Genome] problems

[Brooke Rhead]

Hello CBK,

I will try to answer each of your questions below:

1) I am not able to reproduce the error you got.  The example sequence 
pasted at the end of your email seems to be in perfectly acceptable 
FASTA format.  Is there a possibility that a stray ">" character somehow 
got into the text when you BLATed it?

If you continue to have problems with it, let us know, and we will try 
to look into it further.

2) There is not a way to limit the output of BLAT with the web 
interface.  However, BLAT output can be sorted so that the information 
more relevant to you is at the top.  For instance, if you sort just on 
score (and not also by query or chrom), the 100% identity hits for each 
query tend to be at the top.  (Note that sometimes BLAT hits that show 
100% identity can be lower-scoring, if only a portion of the query 
aligns to the genome, but that portion aligns perfectly.)

If you have a lot of sequences to BLAT, you may be interested in 
downloading and running command-line BLAT.  It is free for 
non-commercial, educational, and personal use.  With the command-line 
version of BLAT, there are more options for setting parameters and 
sorting output.  BLAT downloads and documentation are available here:

http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads

3) We do not support Excel-formatted files for BLAT, only text files. 
If you can save the FASTA sequence as a simple text file, BLAT shouldn't 
have any problems with it.

I hope this helps.  If we can be of further assistance, please do not 
hesitate to contact us again.

--
Brooke Rhead
UCSC Genome Bioinformatics Group



Caleb Kallen wrote:
> Hi,
> I am trying to blat search multiple sequences.  I emptied all my caches and
> cookies, and it worked for me in one trial, using 3 sequences.   Then,
> 
> 1) I got an error:
> 
> No name in line starting with '>'
> 
> In this case, I submitted the following (see below), which does appear to
> have a name in FASTA format:
> 
> please advise.  Also
> 
> 2)  Is there a way to limit output to 100% match for the entire sequence
> that is submitted...I am looking to find genomic coordinates that exist, not
> scroll for similar sequences?
> 
> 3) finally, I had problems when submitting using an Excel sheet...there was
> no hyperlink to output and no error message offered.  Any suggestions?
> 
> 
> thanks very much
> CBK
> 
> 
> 
>> Hits_A1    
> CCTAGGCACAGCCAGGTTTCCTTTCCTAGAAGCCAGACTGCCTGGATTCGAATCCCATGGCTACCTGGGCTGTGTGACCT
> TGGGCAAGTATTTAACGTCTCTGAGCCCTAGTATTTCCATCTTTAAACTGGGAACAGTGACTGTGTCATAGGGTTGCTCT
> GAGGAGTAAATCAGATTGTCATGTAAATTGTTTAACACGTGGGTAGCACTTTATTAACAACAAAGACTGGTTGGAAGCCC
> CCGTCTGTGCTTGCAGCTGCCTTCAGCCATGGTCCACCCTACCAAGGCATGTAGGCTCAGAGAGGTCCAGTAACTTGCTC
> AAGGTCACACGGCAAGTGAATAGAAGAGCCAGCATATGAACTTTGGTGTGGTTGACTCCTGAACTCAAAATCTGAATCTC
> TATGCTTTACTGGCTCCTTGTGAAAGAAAGAACCGCACATCTGTGTGTGTGTGTGTGTACACGTACACACACACACACAC
> ACTCACACAAACATTTCCACTGACTTGAAGGCTCAGGAGATATCCCCAAAGCCAAGGCATGGATCTGCTGGCTGAGGAGG
> TGTGAGCCCTCGGAGGGCACCATGTGCCCAGTCCACACTGACCTTGTGTCTTGCCATCCCTTAAGGACCCCGTCTCCTCT
> GCTGTGTGCTCATAGGGAAGTGGCCCGGAGAGGCCAGGTCAGACTCTTAATTCTTTGGCATCTGAGATGTAAGAACATGG
> GCCGTGCAGCCAAGGGTGGACAGACGCCATGTGGGTGTGTCTGGCAGGACTGCCTGCCTGCATGAAGGTCACGCTGCCCT
> TTACAGTCACACTGGCCCCAGCTCCCCACGGTGACCTGCTACCAGGCCTGTGAGAGGGGCCACTGCTTGCTGGGCTGTGG
> GAGCACTAAAAGGAAGACCCCCCTCACCAACCACCTTGGAAGGACCCAATATCATCTCTGTTCTGCTCCCCTGCCCGCAG
> CTGGAGGGGAGGGAGAGCTGGCCTCTCGCACCTGTGAAGTATCACTAGCAACCATGACCTAGCAAAGGGCTTCCTTTCCT
> CTCATATCACAGTCTATCTCTCTATCTATCGTCTAGAAAAGTTTCCAAAGTCAGTCTGTTGACAACCTGCTGGACTTTGG
> TGGCTGAGCATTTTGCCTCTTTGAACTACAATCTCCTTGAAGGCAGAGATTTTAGTTCAACCCTGAAAAGTCCATTCTAT
> CTTTTTTTTCTTGGGGAGATGGGTGGGGGGTTGGGGGGCGCGGTGGTAAGGCATCAGTAAATGACCTGATAAGGTCTGCA
> GGATTAGCTCTGGAGGGCTGCCTGATACAGGCAGGCCTGGCTCTCCTGGCTGTTTCCACGTGGCATGACTGGAAGATGAG
> TGTTGTCCTTCCACAAGAAGGTGTACTGGACCCCTTGCTCCTGCTCATGGTATCCCCCCATCTGCCCTGCAGAAGCCGAC
> CTCCCGACTCCCAAACCCTATGGCTTGGCTGGGGCTGGTATACCCCTGGCTCAGAGTCTGGCCATGACCCACAGCTGGCC
> AAATAGAGCACCATTTCCTTGGTTCAGGCTCACCCAGTCACTGCCAGAGAGACCCAATTCCTGGACCCTTCCAGGACTTC
> TGGGCAAAGAACACCTGTCTGTCTACTTGAATGGGAGCTGGAAAGGTTACGTTACGAGCAGCAGGGGGCAGGTGTGAGCA
> GCCCCGTGGCAGAGAGGTCTGCCTCAAAGTGAGGGGAGAGAGAAACTCTCCTGAGTCCTGACAGCACTGAGCCCCTGGAG
> ACATG
>> A2    
> CTCCCTGAACTGCAAGCAAATTGGGAAATTTGAATGTGACGCAATAAGCCTGCAATAAAACAGAGCCTCCAAGAAGTGCA
> TGAAGCGAATCTCCTCCCAGCCTAGTCCACCACCCCTCTGCAGCTTCCCGAGCTGTCACCCTCCAGGGTGGCCACATACA
> GTATTTATTTTTTTTAATTAAGCTGCGTTGCTGTGTGGCTCACCCTCCACAGATGCTTTATAAAGCCCAGCCTTGTAAGT
> TGCTGAAAGTTTTTATTTTTTTTTAAGCGGATAGTAAAATTAAGCAGTTATTAGTATTCACGAAAAATGCTCGTGGCAGG
> CTTCGCACACGTAATGAGAAGCCACCTGCAGTTCAAAGCAGTACTTGATAATGCTGTAATTAGATTTGAGATGCAAAAAA
> GCTCATTAAAATTAAATAACATATTTGTCACTGTTTTAAGAGGTACAGATTGCCTAGAACCATGCTGGTCTCTTGACCTT
> GAGTATTTTGGCAGAGTCCTTGCTGCCGACAATTCAAAAATAACATCAGCAATTCTGCAGAGAGTCCTGAAAACATGCTC
> ATCCTTGGTTCAGTTTGTATTGAAAAAATTATATAGATATCCAGGGGAAATCACAGATTTGTACACAGTGTGTTCTGGGA
> GAAAAGGGTGGCCACAGTCCTCTCTGAGCCAGTAGCTCAGACGCTGTGAAGAAGAGATGGATGTGTGCCTGTGGGAGGCT
> GGGGCAGGTGGAGGGGTCCCCCATAGGACACGGGGACACTGTGAGGGAGTTTGCAGGAAGCGGCGGCCTTGGGCACCACT
> GCTTACCACTAAGCTGAGCTGGATGAAGCCACTTGCTCAGAGCAGGCCCAGGGCGACTGGTAATCAGATTGTCAGTCAGT
> GTTTCCCGGGTGCCTACCGGTGTACCGGGTCCCGGGCAGGGGATGGTGGGGCCGCAAGTGCCAGTGAGATTTGCCTCAGG
> CTGCAAAAGAGGTCATAGCCTCATCACGGAGATGAGGCATAAAGTCAGGTGCCAGGAAAGTATTTATTGTTAATAAAAGT
> AGCTAATGTTGACTGAGCGTGTCTTTCATAGTAGGTAGCCAAGCGTGGCATGCATTATCTTAGGAATCATCTCCATAGTC
> TGTGAGACAGCCCTGACTGCCCCATTTTCCTTGAGGTTACGTTGCTCTTGTAAGGTCACTTCACTAGTAAGTAACTAGTA
> AGCCCAGAGCTGAGCCGGGTTCAGATTCAGGTCTGGCCTTCTGCAGCACCCCTTCTGCATGAATCACAGAGTCACTCAGG
> TCCCATGGGCAGAGCAGAGAGACCCAGGGTGGGAGAGGACACACATGAAGGCACTCACTGAGGACCCACTCTTCACCAGA
> TCCTGCTCTAAACACTGCGTGCCTGTTCATCATTGTATCCCCATAGCAACCCTGTGATTCCATTTTACAGATGAGGAAAT
> TGAGGCATGAGAAATTAAATAACCAGTCCCAGGTCACCAGGTAGTTGGTGGCAGAGTTAGGATTAAGCTCTGACCTTGAC
> TGTTATTCTATGTTTAATTTTTCTTGAAATCTGTAAAGCATTCTATAAAGGTAGGATGTAATTTAAAAGCAATTATGATG
> ATTTTTGTTCTTGGAGAAAGAAAATGCAAGTTGCTTTCAAGGGGCAGAGACCAGAGGAGTTTTCCTGGGGGCAGAGAGCA
> GTTAAACGAGACGTGAGTGGAGGGGGCCAGATGGAGGGAAAATGAGGCCAAGTTAGAAACAGAGGCCTGGCCTGGGCTCC
> AGGGACAGTGTGGGCCCCCATTTTGGAGGAGCTGCGTGTCCTCCAGGGCAGGGAGTCATTGGGAAGGCAGTCTGGGCCGA
> CTGCCCCTCCTCCCGGTGGCTGGATTGATTTTCCAGGCTGACTCTCTTGGCACTGGGTCCAGATTTAGTTCTGTGGAGAG
> CTCGTCTTTCAAAGTCCAGCTCAAATGTCACCTCCTCGGCAAAGACTCCCCCACCGCCTGAAGCAAAATTAATCACTCCT
> CCTCCATGTCCCACAGCACTCTGTTGATACCTCCGGAATAGTCTTATCACATCGGACACGGATTTATGTGTTTACAAGTC
> TGTCTCTCCAGCTAGACAGCGACTTCTCGAGGGCAGAGCCCACTCTGCCTTTGTGTCATTGTGCCTGGGGCAGTGCTGCG
> TGTGCAGTGGGTGCTGAGGAAATGATGCATACATGGAGGACCAGTGGATGGTTTAATTTGATTTCAGTGACCAAGCACAG
> AGCTCTTACTTTGTGCAGGTCTTGTTCTAAGCTCTTTACATATGTGAAAGGATTTAGCCTTTATAACCCCATGACATCAG
> TTAGTTCTATGATGAGCCTGTTTTACAGGTGAGGACACTGAGGCTCAGAGAGGTTGTGTAACTTCTCAATATCATACATC
> TGGTAAGTGGTAGAGCTGGGAGTTTTAAACCCAGGCAGCCTGGAGTGAAAACATCTGCTTAAAGTGATTTTGTAGCTACA
> GATTGTATATAGTGATTCTTATTAGGGGAGTTTCTGGAATGAATTCTCATTTCACTCTTCTTTTCCCTAACTTGTCTGAA
> TTTAGGAAGGTTTGGAGAAAGCGATTGGGCTGCGATGCAGTTAAGTTTCCTTTGTTGTAAGCCGTGGAAACCAACTCTAG
> CTAAATTAAGCTAAACAGGGATTCTGTTGTGAGGATCTAAGTAGCTTGCAGAAGGAGCACGCTGGAAGGAAGGGCTTTGG
> GGAGGCC
>> A3    
> CTGGGATTACAAGCGTGAGCCACCGCGCCCAGCCTGTCATTTGCCTTTTACTTTTGTTTTGGGTGGGGTTAATTTGGCTC
> ACGGTAAAAGAACAGTTTTCCTGCATGTTTTATTAACACTAAAATGAAACGCATTTAGGGTCACAGAGATTTGGGGCCAT
> ACTAAACCAAAATTTTAAAAATAAAGTCCTTGGCTGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCA
> AGGTGAGTGGATTGCTGGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCCATCTCTACTAAAAATACA
> AAAAATTAGCCAGGCGTGGTGGTGGTACCCTCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAAGATCCCTGGAGC
> CCGGGAGGCGGAGGTTGCAGGGAGCCAAGATCAGCCACTTCACTCCAGCCTGGGCGGTAGAGGAGATCCTGTCTCAAAAA
> ATAAAATAAAATAAATAATTTCCTCCGTATCCTCAGAAACAATTCAAAGCCATGTGTAAACCCAAAACTGAGTTCATCAC
> TTCTAAGATCAGAAGAATTTGTGTTTGTTTATGATGAACTCACACACCATAATCTTCCAAAATCATTGAATTCCAGGTGT
> GACTAAAGCAAAGTTTCAGATTGCAAGTTGACACTGTTACCTGAAAGCTGCACACAACTGCTGAATCACTTTTTAAACAA
> GCATGAAAACAACAATTTCTCTTGTTCCCAGTACAGCTTTGAGCCACAAAAATTAATTACATCACCTAGGAAATTAGCCC
> TGCGTTTTGCATCCAAAGGTCAATGTTCAGACTGAGAAATGGTTTAGTGCTTCCAAACACAGGGCTCAGCACATAAATAT
> TTATCATGCAGAGGACAGGAACTCATTGTACATGGCTTGTTTACCTTATCAGCCAGTTACCTGGGGCAAAGAGTCCACTG
> TCTGCTTCCTGTCCTAATTTCCCTTGCCCAAGACCTTGGGCAATTGTTTATTTGACAGAGTGTTCTGTCCCATTCCCTTT
> CTTCTGGGAATAAGGGCACAGGATACTAAACAAATAGATCACCTGGTCTGGGAACACCTGATTTCTGGAGAGGCTGAGAC
> TTCTAGGTGTTTGCTAGAAAGATCCAAATACAGGAAAGAGAAAACAGCTGCTGCGTTCACAAGAAAACGGAGGATGCATT
> TCTCCCCATGACTTCGGCTTGTTTGGGTTCGCATTTCAAGTGCTCTGACTGGGCTTTATGGAATGTCCTGTCAAGCTTTT
> GATTGTGAAAATAAAGTTACAGAGACACAGGGGAACAATAATCACAGACGCGATTTGTAGCACAGACACGGCCTTTCATT
> TCATTCCTCTTTTCTGTGTTTACAAATTGCGACTGTTAGAGAAACGTTGGCCAAGCTGGCTCTTTAACCTGGCCACATAT
> TTATTTTGGCCACTCTTAGCTTTTATTTCGCAAGGTCTCATACTCACCAGCTCAGGTGCTTGTTACATAAGAAAGCTCTG
> CCGGCGGAGTGCCAAAAATTCAGCTCAGCATTTTCTGCCTCCCTGCAGTGGTCCCAAGGAATGGATACCTCTGCAACCAT
> CTGCAACCTGGACCTTTGCAACAGGAATCTCAGGTTAGGTGACACTGGCCAACATGCAGGGAAACTATGTCAACAAGCTA
> GTTTTCCTTTCCTTCCTTCCTCCTTCCCTTCTTCCCTCTCTCCCTCTCCTCACCTCCTTTCCTTTCTTTCATTTTTGATA
> CAGTAGGGTGTCTCACTATGTTGCCCAGGCTGGTCTCAAACCACTGGCCTCCAGTGATCCTCCTGCCTCAGCCTCCCGAA
> GCTCTGAGATTACAGGTGTGAGCCTCCAGGCCTGGCCCCAAACTAGTTTTCAAGGGTTGGTTATCACATCCCTTGTATCT
> TGGTTCTCACCAGTCAATCATTACGTACTTTGCATGGATTTATTAGAATAGATTTTAAATCTCTTGTTTTAGCCTCTTCT
> ACTTGTAGAGCTACCAATCCTAGAAGTTTACTAGCAACTCTGCATTGTTACATTTTAATTTGCATTTTGTTTTGCATATA
> TTTAATTTGCATTTAGTTTTGCATTTAGTTTGATTGT
>> A4    
> GAAGTAAATTACAGGCACGCTTTTCAAGCTCTGAGCTCTTGAGAAGACCACTGAGCTCAAAGTTAGTCCAACAAATAATG
> TTCATCATACACAGCATCTTCTGTTTAAGAAGGCAGGAAATTGGCCGGGTGCGGTGGCTCACACCTATAATCCTAGGACT
> TTGAGAGGCCGAGGCTGGCAGATCACTTGAAGTCAGCAGTTCGAGAGACCAGCCCACATGGCGAAACCCTATTTCTACTA
> AAAATACAAAAAATTAGCCAGGCATGATGGCGTGTGCCTATAGTCTCAGCTACTCGGGAGGCTGAGGTTGAGAATTGCTT
> GAACCCAGGAGGCGGATGTTGCAGTGAGCCCAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTATCA
> AAACAATCAAGCAAAAATGGTTGTTGTCAACACAGTGGGTAACATCTGAACCAAACAAGCCAGGAAATTGAGCACTTGGT
> TTTAGAAAACTTTTCATCCAAAAAGGGTTAACAGATTTATAATGTGAGTTTAAAGGGGTCATCTCGAGTTTTCAAGAACA
> TTCATTTATGCCAAGCAGCTCCTTCTCCACTGATATCAAAGATATTTTACTGTAGAGGGCACCAAATACACCCCTTCATT
> ATTTTCTCCTTTTAAAGAAAACAGGACAAATTAGTGACCTGGAAGGTTTGGATAAAAACACATCAGAGAAATCATTGTTT
> TGAGAGTTCTTTTCAGCTTAATTAATTCACATTGGCTGCTCAAATTCATTTTAGGTCTGGAGGCGATTTTCAAACAAAAT
> GTTATGACAGAGATCATAACAAAGATTTGGAGCAAAGATTTCTGTTTGCTGAGCTGTCACTCAAGCTAAACAGATAGCAA
> CAGGGAATCTTTAGGCAAATTAACTTTCCCCTGAATGGGTTCTTTTATCCTGTCCATCTGCATTCATTCCCATGGGTACT
> TCGAGACCGAGCTAACAAGTCAGATATACATAATAAAGAAAATTGCTCAAGGGAAAAAAAAATCAACTGTTCATTTGGGA
> AAATGTGGTGCTAGTCTAAATACAATTCTCTATTAATTTCAAGGGGTCTAAAAATCTATCACCAGTTCTTCAAAAAGTTA
> AACAGACTTATCCTGTGGCCCAGCAATTACATTCCTAGGTACGCACCCCGAAGAACTGAAAACAGATAGTCAAACAAATA
> CTTGCACACAAATGTTCATCGCAGCACTATTCTCAATAGCCAAAAAGTGGAAATTACTCAAAATTCCATCAACAGATGAA
> TGGAGAAACAAAATGTGGTATATACGTATACAACAGAATATCATCCAGCCGTGAAAACAAATTAACTACTGATGTGTGAT
> ACAACGTAGATGAACCTCAGAAACATGACCTTAAGTGTTAAAAGCCAGACATAAAGATCATGATTCCGCTTATGTGAAAT
> ATATGAATGATCCCCTTTATACGAAATATTCAGAATAGGTGAATTTATCAAGACAGAAAGCAGATCAGTGGTTGTCAAGG
> GATGGGGAGGGGGGAATGAGGAATGACCGCTAATGGGTACGGGGTTTTCTTTCGGGGTGATGAAAATGTTTTGGAACAAG
>> Hits_A5    
> TGTGTTGTGTGTGTTGTGTGGATGGGTGTGTGTGCTGTCTTGTGTGTTGTGTGGTGTGTTGTGTGCTATGTGGATGGGTG
> TGTGTGGTGTGTTGTGTGTTGTGTGGTGTGTGTGGTGTGTGGGTGTGTGTGGTGTGTTGTGTGTTGTGTGGTGTGTTGTG
> TGCTGTGTGGATGGGTGTGTGTGATGTGTGTGGTGTAGTGTGTGGTGTGTGTGTGGTGTGTGTGGTGTGTTGTGTGGTGT
> GTTGTGTGCTGTGTGGATGGGTGTGTGTGGTGTGAGTGGTGTGTGGTGTGGTGTGTGGTGTGTGATGTGTGTGGTGTGTT
> GTGTGTTGTGTGGTGTGTGGATGGGTGTGTGTGGTGTGTTGTGTGGTGTGTTGTGTGCTGTGTGGATGGGTGTGTGTGGT
> GTGGTGAGTGGTATGTGGTGTGGTGTGTTGTGTGTTGTGTGGTGTGTGTGGTGTGTGGATGGGTGTGTGTGGTGTTTTGT
> GTGTTGTGTGGTGTGTGTGGTGTGTGGTGTGGTGTGTGGTGTGTGGTGTGTGTGGGAGTGCTCTCTGGCCAGGTGCAATC
> TCCTTCCTGTTCAGCTCCTGGGGCTGCTGCTACTCTTAGTTCAAAAGACTTTTTATCCCTGGCAAGGACAATTATTGGGG
> TCACGGTGACCTGCCTGTTTCAGCGCCTGCTTGGGCTTGTTTCGTTTGGCCTAAGACAAAAGCTTGAACTCTGGAACTGC
> CCAGAGGGGCGAGGGGTGCAAATTCCCTCTGCCTGACCTAACTGCAGTGTTCACAGGACTGACTCATTGTCCCCCCGGGT
> CAGGACAGGAGTGACATTCAAAAGAACTCATAAGCAGTTTGGCCAGGTACTGATCACTCCGAATGGATTCTGTGCTTGAG
> GAATCCACCAAAGGCCTTTTTGGTTTGTTTTCCCAGAAGCCCATCAGTCACCATCTGGGGAGGACAAGGAGGGAGCAGGG
> CTGATCCAAGGAGCTCTGGGGCAGATGGACTGTCCCTGTCACGGCTTCTTTTACTGGTAGTAATGACTCCCACTGGTTGA
> GTATGCAGGCGCCACTTTGCTCCATGCCAGGTACCATCCATGCCTGCACTTTCTTTTTCTTTTTGTTTTTTGAGATGGAG
> TCCCGCTGTGTTGCCCAGGCTGGAGTGCAGTGGCGAGATCTTGACTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATG
> CTCCTGCCTCAGTCTCCTGAGTAGCTCGGATTACAGGCATGCACCACCATGCCCGGCTAATTTTTGTATTTTTAATAGAG
> ATGGGTTTCACCGTGTTGGTCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCCACCTTGGCCTTCCAAAGTGCTGG
> GATTACAGGCGTGAGCCACCGCACTTGGCCCATGCCAGCACTTTCTAGGTATAATCTCACTTGATCCCATCCGGCTCTTT
> GAGGCAGGCTATATGATCATGCCCATTTTGCAAATCAGGGAGCTGAGCCTGAGGAGCTGGGGTCCTTGCCCAGTCACACA
> GCCAGTAACAGCAAGAGTTCTGATTTACCCCTAGCTGGTCTGGATTCTCTTGGTCCCCTTATACACCTGTTCCCTGCTGG
> G
>> Hits_A6    
> AAGTACAGATAAAAGCTGGTTGAGGAGGTGTTGATAGCACAGAGTGTTTTTACGGAGTGTCCTCGGAGGGTTACATGCTC
> CTTTTTGTTGAATCCGAATCTTTTTTTTTTTCTAATATGGAGCCTCATAATCATTCAAGGACTCAGTGTGATGCCACAGG
> TTTCAAACTTGCCAGTTCGTCTCTTATGTTCTGCCAATTTTTTAAAAGTGGGAATATGAGTGCATGTGCACGTGTACACA
> CACGTGTGTGTGTGTGTGTCTTTGTGTATGTAAAATGCTTGGGATAAAAAAAGATGGATCAAATTTTGTCTGGCATGGCA
> TAGCAACTCTCACCTCTAGTATCCTCTAAACATTTAACCAAATGGACTTTAACTGGTTTACTTCAATTCTATTTTTATTT
> TCGTAGTCATTTAAATGTATGGGGAGCCAACTCTTTCAAATGAGACATTTTGTCATTAAAACATGTTATTTAGTTTAACC
> GCATGGGCCCGGCTTCAGCAACATTGAGGACTGTGAAGAGGGTTCTGAGCGGCTGTTCTCTCCTGACCTGACCGCAGCAG
> TGACCCACCAGCTTGCAATGCACGCAAACTGAAACAGGCAGGATGGCCAGCCCAGGGTTGTCTGCACGGTGGTCTTGGCA
> TCTGTACCTTAGGTTGCCAGCTCCTGGCCCTCCTTGCCTGCATTTGGTGGCCCTTGGCCCTGCCGTGTCATATGGCACAA
> GAGCCCTTCTGGCCCGCATCACCCTGTGTACTGATTAGGCAGGAATCAGCAAATCCGTTGAGTGCATGTTTAATGTGACA
> CAGATGTGGGACATACTACAGATCTTTCTGCTTTACAAATTTTCAGCTTTTTGCATTTCATCAGTGTTGCTTATTATTTA
> CAGAATGTAACTTGAGACATCAGAACAGATTGTAATTTTTAAAAAGGTTGTTGGGGGGGTGGGCCCGCAGGGGATCTGGG
> AGAAAAAATCCAGTAGTGTGGAATGTTGTTTGCTGTCCAGACCAAACAAACCAGTTTGCCAAGGGTTGATGGACTATGAC
> AATCAGTCCAATTCATGTTAACACTGGGGGCACTTAATTAAAAGGCAGCTTGACCTCCTTATCACCAAATAAAGAATAAT
> CTTTTGTTACCAGGTTGACCGTCGCAGCACCAGGCAGAAATGTACCCCTTGTAGAGGCACTGAAGGGTACCACCAAGCTG
> CCAGCTCGTGTCCTGCCTCCTTCCTGTCCACAGAGAAAGGCACCATTGAACCCAGTCCCCACTCAGACATGTGGATATTC
> TTGCCTCATGCCTGCTGTGGCTTTACACCCAGGCGCTATGGCAAGAGGCGGAAAAAAGAAATCTCTTCCTTTGCCCAAAA
> ATCCAAGATACTCTTGAGGGCATTGGAATGATGAGCCAGGCCAGTTTGACACAAGTTCAAGGAGAAGGTACCATCTCTTG
> CTTCTAGAGGGGCACATCTGGCTAGAGGTGGCCCTGGCTTCTGAGAAAGCTCAGCCATAGGTTACATTTAAGGGCAAACA
> ATGAAAAGCACCAGCTGGTCGGGAGGAAGATGAGGAGGAGTGGGTGATTGGTTGCTTCTTTCCTGTGTCTAGTTCTAAAG
> AACTTAAAACTTGGGTCCAAAATAATGAGAGCCGTGTTGTAAAAATCATTTGAAGAGAGTTCTCCTGGGGAATGTGAGCT
> AGTGCCGTGACCTGATCCCTTGGTCAGATGGTTCTGAGCTGTTTAAGTGCTGAGTGTCAACTGTCTACAGGGAGCCAGGC
> CCCTGAGGAGCGGCCAGGGTTCCAAGCCCCACTGTTCTTTTCCTTCCTGGAAAAGTGCAGACGGTGCACGTTCCCCGGAG
> GCCACCAGGCAGCTCTCCAGTTGCCCTCTGGGTGAACGTGACCCAGGTCGGTAACTTTCTAGTGTCCCCCCCACGTTGGA
> ATGATCAGCATTCCTGTACTCCAGGGGTTCTTGAGTTCTTGAGTTGTTACCAACGCCCTGCCTTTCTCTGGCTCAGATTC
> AGAGGAGGAGTTCCACTGCGGACTGCCGCTTCTTCACCCTCTGGGCTTCGGAAGCAGCACCTCTGGCTCCCCTGCACCCA
> GTCCTCAGTCTTGTGGCCCTGGTCTGCCCCTTTATCACATGTCTTGAGCACCCTCTCAGCACACAGCACCGTTCTGAGCG
> CTGAGGTGCGACCATGCATAGAAGAGACAAGAATCCCTGGTTCCGCATGGCTTCCCTCAACACCTACGTTTCCAGGCCAT
> GGCTTGGGTTCAGAAGAATCACCCTCCCTGGAAGAGATGAGTGACTGGAAGGAGAGCATGTCACTGGCTCCCCTGAGACC
> CTCCCAAGAGCCTCAGTTTCTCCCTCTACCACCTGAAGTCTAACTGCAGGGCCTGAAACAGATTCTCTTTAAAAACCCAT
> GAGTGTGGTGACTGCATAGGTTTTCATTCTCCTGAGTTCTTAATTTCCGTGTCCCTAGCACTTTTTGAAGCATCTGCTCC
> TGTTGCCCCTTTCTTTTCCTCCTCACCCTCCTCCATAGTCTCTGTTTGATAGTAGAAGGAGATTTAAAACCTCCAGGCTG
> AGTGAACAGGCGGTCTTGAAAAAGCAAACAAATCGGGTCAGGCACGGTGGCTCACGCCTGTAATCCCCAGCACTTTGGGA
> GGCCGAGGTGGGCGGATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAATATGGTGAAACCCCGTCTCTACTAAAAAT
> ACAAAAAAATTAGCCGGGCATGGTGCCGTATACCTGTA
> 
> 
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome