[Genome] N/A

[Hiram Clawson]

Good Morning Carmen:

 From the description page for the human genome
these haplotypes are described with a link to the haplotype project
and the NCBI assembly description:

	http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg18
	"chr5_h2_hap1 -- a chromosome 5 alternate assembly of the SMN1 gene region (NT_113801.1, NT_113802.1)."
	http://www.sanger.ac.uk/HGP/Chr6/MHC/
	http://www.ncbi.nlm.nih.gov/genome/guide/human/release_notes.html

--Hiram

carmen at preventiongenetics.com wrote:
> Hello:
> I used your PCR option on the Genome Browser recently and got the results 
> below.  Could you please tell me what the nomeclature in the FASTA header is 
> for the top portion? (">chr5_h2_hap1:..").  In particular, the h2_hap1 part 
> (haplotype? for?).  
> 
> Thanks,
> Carmen I.
> 
>> chr5_h2_hap1:1543929+1544260 332bp TGTGGACAGGCCTGAGAATCAGAG 
> CTCCTCCACTTGCTTCCTAGCC
> TGTGGACAGGCCTGAGAATCAGAGaaaccttctctggggctgcaaggacc
> tgagctcagcttccgccccagccagggaagcggcaggggaaagcaccggc
> tccaggccagcgtgggccgctctctcgctcggtgcccgccgccatgtggg
> ccgtcctgaggttagccctgcggccgtgtgcccgcgcctctcccgccggg
> ccgcgcgcctatcacggggactcggtggcctcgctgggcacccagccgga
> cttgggctctgccctctaccaggtaggctgagcgccccggtggcctggcc
> gccggtgccaGGCTAGGAAGCAAGTGGAGGAG
>> chr5:70918866+70919197 332bp TGTGGACAGGCCTGAGAATCAGAG CTCCTCCACTTGCTTCCTAGCC
> TGTGGACAGGCCTGAGAATCAGAGaaaccttctctggggctgcaaggacc
> tgagctcagcttccgccccagccagggaagcggcaggggaaagcaccggc
> tccaggccagcgtgggccgctctctcgctcggtgcccgccgccatgtggg
> ccgtcctgaggttagccctgcggccgtgtgcccgcgcctctcccgccggg
> ccgcgcgcctatcacggggactcggtggcctcgctgggcacccagccgga
> cttgggctctgccctctaccaggtaggctgagcgccccggtggcctggcc
> gccggtgccaGGCTAGGAAGCAAGTGGAGGAG
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