[Genome] download of orthologous genes
Barbara Hutter
barbara.hutter at bioinformatik.uni-saarland.de
Tue Apr 24 03:38:20 PDT 2007
Dear UCSC Genome Bioinformatics team,
I would like to download genomic sequences for 200 orthologous
mammalian and chicken genes with a surrounding of 300 kb upstream and
downstream of the transcript, preferably together with their exon
annotations in one file (like the NCBI GenBank format). I know the
chromosomal locations of the human genes. As the homology information
between the species is integrated via alignments and links in the UCSC
Genome Browser, is there a simple and fast way to retrieve the
corresponding genes' sequences plus 300 kb neighborhood, including
annotations, for mouse, opossum, chicken, etc.?
Thank you in advance for your help.
Barbara Hutter
Center for Bioinformatics
Saarland University
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