[Genome] download of orthologous genes

Barbara Hutter barbara.hutter at bioinformatik.uni-saarland.de
Tue Apr 24 03:38:20 PDT 2007


Dear UCSC Genome Bioinformatics team,

I would like to download genomic sequences for 200 orthologous  
mammalian and chicken genes with a surrounding of 300 kb upstream and  
downstream of the transcript, preferably together with their exon  
annotations in one file (like the NCBI GenBank format). I know the  
chromosomal locations of the human genes. As the homology information  
between the species is integrated via alignments and links in the UCSC  
Genome Browser, is there a simple and fast way to retrieve the  
corresponding genes' sequences plus 300 kb neighborhood, including  
annotations, for mouse, opossum, chicken, etc.?

Thank you in advance for your help.

Barbara Hutter
Center for Bioinformatics
Saarland University



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