[Genome] chain tracks by chromosome / strand

Dong Xianjun Xianjun.Dong at bccs.uib.no
Thu Apr 19 05:49:37 PDT 2007


Hi,

I am thinking whether you could offer the chain track divided by 
chromosome and strand, for example, the chain on the same chr and same 
trand would be put in same row, each row presents chains on different 
chr/strand. Like,

chr1(+): ==========     ========-----=========   =====---=====------------
chr2(-):              ----------=====-----------             
-------------=========-----
chr3(+): ---------======== ----------                      
======                      --------
chr4(+):
chr4(-):              ----------=====-----------     =========    
-----=========-----
......

This would make the chain looks more readable than either of the current 
display mode.

Just one opinion, esp. when I felt tired of reading the genome data for 
a whole day. Sure, it could bring more work.

If you could offer the download link for the chains.bed file, I may be 
able to do it by myself.

Thanks

-- 
---------------------------
Sterding (Xianjun) Dong
PhD student, Boris Lenhard's group
Bergen Center of Computational Science
Bergen University, Norway
Mobile: 0047-47361688
Telephone: 0047-55276381
Skype: xianjun.dong



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