[Genome] (no subject)

[Brooke Rhead]

Hi Shop,

The hg16ToHg18.over.chain.gz file is located on our downloads server in 
the hg16 liftOver directory:

http://hgdownload.cse.ucsc.edu/goldenPath/hg16/liftOver/

Please let us know if you have any further questions.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Swapan Mallick wrote:
> Hello,
> 
> I'm working at the genetics department in the Harvard Medical School.
> 
> We have a set of alignments which were created for version 16 of the human
> genome. We wish to map these to version 18, and I would like to build
> wrappers around the liftover tool to do this.
> 
> I have already downloaded the chain file:
> hg18ToHg17.over.chain
> 
> But I think I need the corresponding files: hg16ToHg18.over.chain . Is
> this available?
> 
> Best regards,
> Shop Mallick
> 
> 
> ---------------------------------------------------------
> Dr Swapan 'Shop' Mallick
> Dept. of Genetics
> Harvard Medical School, NRB
> 77 Avenue Louis Pasteur
> Boston, MA 02115
> Tel: +1-617-432-5993
> Email: shop at genetics.med.harvard.edu
> ---------------------------------------------------------
> 
> _______________________________________________
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