[Genome] Re-sequenced ENCODE regions WANTED

[Peter Good]

The actual raw trace files from the ENCODE HapMap sequencing are in the
trace archive.  For Broad data, search SPECIES_CODE = 'HOMO SAPIENS' and
STRATEGY = 'ENCODE' and for Baylor data, search SPECIES_CODE = 'HOMO
SAPIENS' and STRATEGY = 'SNP'.

A description of the ENCODE HapMap sequencing and data is at the HapMap web
site:   http://www.hapmap.org/downloads/encode1.html.en

Regards,

Peter

-- 
Peter Good
Program Director, Genome Informatics
National Human Genome Research Institute
Bethesda, MD  20892-9305

Phone:  301 496-7531




On 4/16/07 8:02 AM, "Iris Vargas Jentzsch" <imj15 at student.canterbury.ac.nz>
wrote:

> Hello UCSC people,
> 
>  
> 
> I am interested in getting the sequence data generated by the HapMap ENCODE
> project (PCR-based sequencing of 48 individuals across 10 different 500 kb
> regions). However, it seems really tricky to get to this data; SNP genotype
> data and Affymetrix datasets are available everywhere, but the raw sequences
> are nowhere to find.
> 
>  
> 
> I did see the Web page for the ENCODE project at UCSC. There are effectively
> some sequences there, but I am not sure if these belong to the re-sequenced
> ENCODE regions because they belong to specific human genome builds (Hg17,
> Hg16). From my understanding I would expect ENCODE sequences to be independent
> from the reference Human genome builds because they have been sequenced
> separately.
> 
>  
> 
> I would greatly appreciate your help, since this search has extended itself
> already for weeks L
> 
>  
> 
> Regards,
> 
>  
> 
> Iris 
> 
> 
> 
> 
> 
> ======================================
> Iris M. Vargas Jentzsch
> School of Biological Sciences
> University of Canterbury
> Private Bag 4800
> Christchurch - New Zealand
> phone: +64 (0) 3 364 2987  ext 7048
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome