[Genome] Re-sequenced ENCODE regions WANTED

[Sean Davis]

On Monday 16 April 2007 08:02, Iris Vargas Jentzsch wrote:
> Hello UCSC people,
>
>
>
> I am interested in getting the sequence data generated by the HapMap ENCODE
> project (PCR-based sequencing of 48 individuals across 10 different 500 kb
> regions). However, it seems really tricky to get to this data; SNP genotype
> data and Affymetrix datasets are available everywhere, but the raw
> sequences are nowhere to find.
>
>
>
> I did see the Web page for the ENCODE project at UCSC. There are
> effectively some sequences there, but I am not sure if these belong to the
> re-sequenced ENCODE regions because they belong to specific human genome
> builds (Hg17, Hg16). From my understanding I would expect ENCODE sequences
> to be independent from the reference Human genome builds because they have
> been sequenced separately.
>
>
>
> I would greatly appreciate your help, since this search has extended itself
> already for weeks L

Iris,

First, I am not part of the Genome Browser staff--one of them might have 
better information than I do.  In any case, information on the encode project 
is available here under ENCODE-HapMap Coordination:

http://www.genome.gov/10005107

In short, I think the sequences are available in the NCBI TRACE archive (but I 
have not confirmed that myself) and a link is on the page noted above.

Sean