[Genome] custom tracks for TIN and PIN RNAs in hg17

[verjo@iq.usp.br]

Thank you very much for your reply and for adding the tracks to hg17  
browser. Please, feel free to ask any question that you may have.

Sergio

Quoting Donna Karolchik <donnak at soe.ucsc.edu>:

> Thanks for these data sets. We would be happy to add these to our
> collection of custom tracks on the hg17 browser. I'll take a look at
> the data sets and let you know if I have any questions.
>
> -Donna
> -----------------------------------
> Donna Karolchik
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu
>
> ----- Original Message ----- From: <verjo at iq.usp.br>
> To: <genome at soe.ucsc.edu>
> Cc: <hnakaya at iq.usp.br>; <emreis at iq.usp.br>
> Sent: Saturday, April 07, 2007 7:59 PM
> Subject: [Genome] custom tracks for TIN and PIN RNAs in hg17
>
>
> Dear colleagues:
>
> We would like to contribute our custom tracks to hg17 browser,
> which
> we think will be of interest to a number of investigators.
>
> The track named TIN_RNAs show the genome mapping coordinates of
> all
> 55,139 Totally Intronic Noncoding RNA (TIN RNA) transcripts that
> we
> have identified in the human genome, as described in our paper in
> Genome Biology (see enclosed).
> The track files in PSL format can be retrieved from Genome Biology
> website:
> http://genomebiology.com/imedia/1795171211288678/supp13.psl
>
> The track named PIN_RNAs show the mapping coordinates of all
> 12,592
> Partially Intronic Noncoding RNA (PIN RNA) transcripts, as
> described
> in our paper.
> http://genomebiology.com/imedia/2029173154128867/supp14.psl
>
> Finally, the track named TIN_PIN_probes shows the genomic
> coordinates
> of all TIN and PIN sense and antisense intronic probes plus the
> exonic
> probes in our custom-designed 44K intron-exon oligoarray. This
> array
> was used for our gene expression experiments with prostate, kidney
> and
> liver human tissues.
> http://genomebiology.com/imedia/1258251625128868/supp16.psl
>
> Please let us know if you need any additional information.
>
> Sincerely,
> Sergio Verjovski-Almeida
> Eduardo M. Reis
> Helder I. Nakaya
>
>
>
>
> --------------------------------------------------------------------------------
>
>
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